Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3 226 2e-53 seq4 122 7e-22 seq2 102 7e-16 >seq3 Length=33601328 Score = 226 bits (250), Expect = 2e-53 Identities = 559/837 (67%), Gaps = 16/837 (2%) Strand=Plus/Minus Query 551782 CTACTAGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGTATCATGGT 551841 ||||| || ||| | ||| | || || |||||||| ||||| || |||| ||| | Sbjct 573095 CTACTGCAGGCGATACACATTTGGGAGGAGAAGATTTCGATAACCGAATGGTTTCACATT 573036 Query 551842 GTGTTGAAGATTTTAAACGAAAAAACAA--AGTTGATCT--ATCTACATCTGCCAAAGCT 551897 ||| ||||| |||||||| || || || || |||| | | ||| | ||| Sbjct 573035 TTGTGGAAGAGTTTAAACGTAAGAATAAGAAGGACATCTCGACCAACAAGCG----AGCA 572980 Query 551898 CTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAA 551957 | ||||||||| | || || |||||| |||| || || || | ||| | || || Sbjct 572979 TTGCGTCGTCTACGTACGGCATGCGAACGAGCGAAGCGCACTTTGTCAGCATCAACCCAG 572920 Query 551958 ACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGG 552017 | | |||||| | ||||| | || || || ||||||| |||| |||| ||||| Sbjct 572919 GCAAGCATTGAAATCGATTCGCTTTTCGAAGGGATTGATTTCTATACTTCTATAACGAGG 572860 Query 552018 GCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAA 552077 || |||||||| | || ||| | || | | ||||| || ||||| | || Sbjct 572859 GCACGTTTTGAAGAACTCAACTCAGATTTGTTCCGCGACACAATGGAGCCAGTGGCTAAA 572800 Query 552078 GTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGA 552137 | ||| ||||| | ||||| |||||| || |||| || || || | ||||||||| Sbjct 572799 GCATTACGAGATGCCAAGATGGATAAAGGTAATATACACGATATAGTTTTGGTTGGTGGA 572740 Query 552138 TCTACAAGAATTCCTAAAATTCGCGAAA--TGTTAAGTTCTTATTTCAATGGTAAAAAAT 552195 || || | ||||| ||| | | |||| | | || || ||| ||||| ||| | | Sbjct 572739 TCCACTCGGATTCCGAAAGTACA-GAAACTTCTGCAGGATTTCTTT-AATGGGAAAGAGT 572682 Query 552196 TAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTA 552255 | || || | || || || || ||||| || ||||| || ||| | ||||| || | Sbjct 572681 TGAACAAATCCATCAACCCCGACGAAGCTGTCGCATATGGCGCTGCAGTGCAAGCGGCAA 572622 Query 552256 TTCTTTCT-GGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCT 552314 | ||| | ||| | || || | || || | | | | |||||||| || Sbjct 572621 T-CTTACAAGGAGACACATCGGAGGCGGTGCAGGATTTACTTTTGCTGGATGTTACACCA 572563 Query 552315 CTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACT 552374 || || | || | ||||| | ||||| | ||||| ||| ||| | ||||||| Sbjct 572562 CTGTCGTTAGGAATCGAAACGGCCGGAGGAGTCATGACCGTTCTGATCAAGCGAAATACC 572503 Query 552375 ACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTT 552434 ||||| || || || | | ||| |||| || || || |||||| ||| ||| Sbjct 572502 ACTATACCGACGAAGCAAACCCAAACATTCACTACATACTCGGACAATCAACCTGGGGTT 572443 Query 552435 ACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACT 552494 ||||||| | |||||||||||| | | || ||||| || |||| ||||||| Sbjct 572442 CTAATTCAAGTATTTGAAGGAGAACGCGCTATGACGAAAGACAACAATCTTCTTGGTAAA 572383 Query 552495 TTT-AATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTT 552553 ||| || | || |||||||| || ||||| |||||||||||||| ||||| || || || Sbjct 572382 TTTGAACTCAGT-GGTATTCCACCCGCTCCACGTGGAGTACCGCAGATTGAGGTCACATT 572324 Query 552554 CGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATCTAGCAACAA 552610 |||||| ||||| || || || ||||||| ||||| ||| ||||| | ||||| Sbjct 572323 CGATATTGATGCTAACGGTATCATGAATGTATCTGCTATTGAGAAATCGACTAACAA 572267 Score = 141 bits (156), Expect = 7e-28 Identities = 273/400 (68%), Gaps = 16/400 (4%) Strand=Plus/Minus Query 550181 GATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAG 550240 ||||| ||||| || || || | | ||||||||| | | || ||| ||||||||| Sbjct 573552 GATGCGAAACGGTTGATCGGCCGTAAGTTTAATGATCCAGCGGTCCAGAGTGATATGAAG 573493 Query 550241 CATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACTCATG-- 550298 || ||||| ||| || |||| | || |||| ||||| |||||||| || Sbjct 573492 CACTGGCCGTTCGAAGTTGTAAGTGACGCTGGTAAACC-------GAAGCTACAAGTGGA 573440 Query 550299 ----AAGGATCTGTT-AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAA 550353 |||| | ||| |||| |||||| || | ||||| ||||| | | || Sbjct 573439 ATACAAGGGCGAGAAGAAATCGTTTTTTCCAGAAGAAGTCTCATCAATGGTGCTTACTAA 573380 Query 550354 AATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAG-TTACGGATGCAGTAATAACTG 550412 |||||| |||| || |||| |||| ||||| || | |||| || ||||| | Sbjct 573379 AATGAAGGAAACTGCTGAAGCTTACCTTGGA-AAGAATATTGCAAATGCGGTTATAACAG 573321 Query 550413 TACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTG 550472 |||| || || |||||||| || || ||||| || || || ||||| || ||||||| Sbjct 573320 TACCTGCGTACTTTAATGATTCTCAGCGTCAGGCCACAAAGGATGCAGGTGCAATTGCTG 573261 Query 550473 GACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 | | ||||| | ||||| ||||||||||| || ||||||||| ||||||| || | | Sbjct 573260 GTTTAAATGTGTTGCGTATCATCAATGAACCGACAGCTGCTGCAATTGCATACGGGTTGG 573201 Query 550533 ATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGA 550572 | ||| || | ||| | ||||| || |||||||| Sbjct 573200 ACAAAACAGGTGTTGGAGAGCGGAATGTTCTTATCTTTGA 573161 Score = 104 bits (114), Expect = 2e-16 Identities = 138/187 (74%), Gaps = 6/187 (3%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||||| || || || ||| ||||| || || | || |||| || ||||| Sbjct 573814 GGCATTGATTTGGGGACGACGTATTCGTGTGTAGGAGTGTTCCAGCATGGAAAGGTTGAT 573755 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 ||||| || ||||||||||| || |||| || |||||||| || | || || || || Sbjct 573754 ATTATCGCGAATGATCAAGGCAATCGAACCACACCATCTTACGTGGCGTTTACCGATACC 573695 Query 550118 GAAC-ATTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATACT 550174 || | | ||| ||||||||||||| ||| |||||| || || ||||| | |||||| Sbjct 573694 GAGCGACTTA-TTGGTGATGCAGCCAAAAATCAAGTAGCAATG--AATCCAAATAATACT 573638 Query 550175 ATTTTTG 550181 ||||||| Sbjct 573637 ATTTTTG 573631 >seq4 Length=34682002 Score = 122 bits (134), Expect = 7e-22 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 930666 GATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCATT 930725 |||||||||||||| || || || ||||||||||| ||||||| ||||| || || || Sbjct 32678011 GATTTTTCTTCACCCAACATCGCAAAAGAAATGCACGTTGGACACTTGCGATCCACTATA 32677952 Query 930726 ATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAGTAAAGTTCATCGAGTCAAT 930785 |||||||| || | || ||||| ||| | || || | | |||| ||| ||||| Sbjct 32677951 ATTGGAGATTCAATTTGCAGATTTCTTGAGTTTTTAGGGTTTGATGTTCTACGAATCAAT 32677892 Query 930786 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCTTAT 930830 ||||| || || ||||||||||| ||||||||| | || ||| || Sbjct 32677891 CATATCGGAGACTGGGGAACACAGTTTGGTATGCTTATCGCTCAT 32677847 >seq2 Length=51801758 Score = 102 bits (112), Expect = 7e-16 Identities = 179/258 (69%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||| | ||||| || || || || ||||| || | || |||| || |||||| Sbjct 30116517 GGTATTGATCTGGGAACGACCTACAGCTGCGTTGGAGTGTTTCAGCATGGCAAGGTTGAA 30116576 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 ||||||||||| || || || ||| | || || || || || ||| | ||||| || || Sbjct 30116577 ATTATTGCCAACGACCAGGGCAACCGCACGACCCCGTCCTACGTTGCCTTCACCGACACC 30116636 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACCAATACT 550174 || | | | | |||||||| || || | || |||| || || || ||||| || Sbjct 30116637 GAGCGTCTGATCGGTGATGCTGCCAAGAACCAGGTGGCCA-TG--AACCCGACCAACACA 30116693 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 || || || || || || || || ||| | | || | ||| | | | ||||| || Sbjct 30116694 ATCTTCGACGCCAAGCGATTGATCGGACGCAAGTTCGACGATCCTGCCATCCAGGCCGAC 30116753 Query 550235 ATGAAGCATTGGCCTTTC 550252 |||||||| ||||| ||| Sbjct 30116754 ATGAAGCACTGGCCGTTC 30116771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029285370213490