Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3 120 2e-22 seq2 95.1 1e-14 seq1 84.2 2e-11 >seq3 Length=33601328 Score = 120 bits (132), Expect = 2e-22 Identities = 197/284 (69%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 13651 ATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCG 13710 || ||| |||||||| || ||||| | ||||||| || || || || | ||| || Sbjct 31445968 ATCGAACTTTCGTTTGCATCCTTCGTAGTTCATGTAGCGGATCTTGCCGAAAATTTCGCG 31446027 Query 13711 CTCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTT 13770 |||| |||| | |||| || | || || |||||||||||||| | || ||||| Sbjct 31446028 CTCCTTCCAACCCTGATCATGGATGCCAGCGATCGACCACATGCAACCAACGTACCCGTT 31446087 Query 13771 GGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCAC 13830 |||||||| || ||||| ||||| ||||||| || || ||| | | ||| | Sbjct 31446088 CGGATCGCGCCCGTCCAAGCTGTAGCGATCGTTGAGGTAGATAGCGGTCTCGAGCGCCTC 31446147 Query 13831 TGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTG 13890 | ||||| ||| ||| || | ||||| || ||||| || || | || | ||||||| Sbjct 31446148 TTCCGGCGATTTAGTCCACTCGAGGATTTTCTTCGCCCAGTACATGCGCAGAAATCCGTG 31446207 Query 13891 CATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACA 13934 ||| ||||||| | | | |||| ||| || | |||||||| Sbjct 31446208 CATCTTGCCTTCCTTCACCATCTGTAGCTGGGCCGAGTTCCACA 31446251 >seq2 Length=51801758 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | | ||||| || || || || ||||| || || || || ||||| |||| Sbjct 21000375 TTCCACCACGCAGACGTAGGACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGG 21000434 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | |||| |||| ||||| || || || || | |||||| ||||| || | Sbjct 21000435 ACAGCGTGCGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGG 21000494 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||||||||| || || ||||| ||| || || | || | || || || | || | Sbjct 21000495 GAATGCCTTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCAATCGTATCCGATGGCTCGA 21000554 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 | || ||||||| || || || || | || || || || ||||||||| Sbjct 21000555 CCTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCATG 21000604 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| || || || || || || ||||||| | || | | || ||| Sbjct 36664900 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGACAGGGTACGTCCGTCCTCC 36664841 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || |||||||| || || || || Sbjct 36664840 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 36664781 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | || || || | ||||| || ||||||| || ||| Sbjct 36664780 ATCTTGGCCTTCACGTTCTCGATGGTATCCGAAGGCTCCACCTCCAGAGTGATGGTCTTG 36664721 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || || || || |||||||| Sbjct 36664720 CCAGTCAAGGTCTTCACGAAGATCTGCAT 36664692 >seq1 Length=37976048 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || || || || || || ||||| |||| | || | | || |||| ||| Sbjct 21735285 TGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGTCCGTCTTCCAGCTGC 21735344 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | |||||| ||||| ||||||||||| || || || || || || Sbjct 21735345 TTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTG 21735404 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || || || | || || ||||| |||| || || || || Sbjct 21735405 GCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTGATGGTCTTACCCGTG 21735464 Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472 | ||||| || || |||||||| || Sbjct 21735465 AGGGTTTTGACGAAGATCTGCATCGT 21735490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396277429241757