Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 129 1e-24 seq1 105 1e-17 >seq3 Length=33601328 Score = 129 bits (142), Expect = 1e-24 Identities = 289/428 (68%), Gaps = 7/428 (2%) Strand=Plus/Minus Query 47941 GCCCATCTGTTCCAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGAT 48000 ||||| || ||||||| ||||||| || |||||||||| | |||||||| | Sbjct 22123662 GCCCAGCTCCACCAGCAGCCGATCCGCCACAAACTCGATGTACTGGGACATGAGTTCGCA 22123603 Query 48001 GTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCA- 48059 |||||||| | | || |||| || || || || ||||||| ||| || |||| Sbjct 22123602 ATTCATGCCCAACATATCGACTGGCAGTGCTTTGGTCAGGAACTCCTGCTCGAT-TGCAA 22123544 Query 48060 CGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGG 48119 | || |||| | ||| | | | || || || || || | ||| | |||| Sbjct 22123543 CCGCATCCCGGATAATGTCCGTCACACGCTTGCGCGATGGCTTCTGTATCAGATACTTGA 22123484 Query 48120 -CATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTG 48178 ||| ||| ||||||||||| | ||||| ||||| || || ||| | | | ||| Sbjct 22123483 ACAT-GAGA---CAGGCAAAGTCGCAATGCAAACCTTCATCGCGCGAGATCAACTCATTG 22123428 Query 48179 GAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAG 48238 ||||| | ||| ||||| | || | || || |||||||| || ||||| || | Sbjct 22123427 GAGAACGTCAAACCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATGGCCGCAAAGCTG 22123368 Query 48239 CCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG 48298 || ||||||||||||||| || || |||||||| || | ||| ||| | || Sbjct 22123367 CCGCTGAAGAAGATGCCCTCGACAGCTGCGAACGCCACGATACGCTCGCCGTAGTTGGCC 22123308 Query 48299 TTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTC 48358 |||||| ||||||||| | ||||||||| ||||| ||| | || |||| |||| Sbjct 22123307 TTCTTGCTCGAGATCCAGTTCATCGCCCAGTCCGCCTTACGCTTCACACACGGCAGCGTC 22123248 Query 48359 TCTATGGC 48366 || ||||| Sbjct 22123247 TCGATGGC 22123240 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| |||||| || || |||||||||||||| || ||||| | ||||| Sbjct 22123112 GTACATCTCGCTGTGCACGTTTTCCATAGCGATCTGGAAACCATAGAAACAGCGAGCCTC 22123053 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 |||||| || || | ||| | || | |||||| || || || || ||||| || Sbjct 22123052 CGTCACCTGAACCTCCTGGCTGAACCGTTCGACCAGATTTTCGTTCACGATACCATCGGA 22122993 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 || ||||||||||| || ||||| | || || |||||| | | | || |||| Sbjct 22122992 GGCGGCAAAGAAGGCGAGCACATGCGAGATAAAGTGACGCTCGCTCGGCTTCAGCGCATC 22122933 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 |||| | | | ||| || || || || ||||| || |||||||| || || Sbjct 22122932 CCAGTCTTTCATGTCCTTAGATAGATCGACCTCTTCGACCGTCCAGAAAGAAGC 22122879 >seq1 Length=37976048 Score = 105 bits (116), Expect = 1e-17 Identities = 440/680 (65%), Gaps = 22/680 (3%) Strand=Plus/Plus Query 213530 GTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTT 213589 ||| |||| || |||||||||||||| || ||| || || | ||| || ||||| Sbjct 149801 GTATTCCACAATTTCGGTGCACAGGTTTGAACACTTGATCGTTCCAACGTTTTGTTGGTT 149860 Query 213590 TGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGG 213648 |||| || | ||| | ||| |||||||||||||| || || ||||| | ||| | Sbjct 149861 ACTCTTT-CGATTGCACGCATCTTTGTAGAGCATGTAAGGCACTCCAGTCTCAACCTGCG 149919 Query 213649 ACACCAGTATCTGGCTCCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTCCGGGC 213707 || | | || | ||| | | | || ||||| ||| ||| ||| | || | Sbjct 149920 ACTCTATGATGGCGAACCACAAAT-CTTGCGCCTTAACCTGTCGCGTGAAA----CGACC 149974 Query 213708 GTAGC-CTCGTA--CTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCA-GACCCTGTCCAG 213763 | || |||||| | || |||||| | | ||| || | ||||| | | | | | | Sbjct 149975 CTCGCGCTCGTAGCCAGT--GTAGAGTTTTTGGAACTCCTCACCCCATGTCTCCGACAAA 150032 Query 213764 TCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCAT 213823 || ||||| ||| ||||| | ||||| ||| || ||| | |||||| Sbjct 150033 -CCAGGACAATCGTGGGGGCACATTAAACTCCACATTTCGTTTGCTTCGACACGCTGCAT 150091 Query 213824 GAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCC 213883 ||||| || || | |||||| ||| ||||| ||| || | | ||| || ||| Sbjct 150092 GAACAAATCAGGAATCCACAGAGCGTAGAACATGTCTCTAGCGCGGACCTCTTCTTTTCC 150151 Query 213884 AGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGAT 213943 | ||| || || || | ||| ||||| || ||| | ||||| ||||||| || || Sbjct 150152 CGTGTTCTTTTTAAGGTCCAAAAACTCAAATATATCCCCATGCCATGGCTCCAAATAAAT 150211 Query 213944 GGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAA 214000 ||||| || || || | |||| || ||||||||||| | || ||||| | Sbjct 150212 AGCAAATGCCCCAGGTCGCTTGTTACCACCCTGGTCCACGTAACGCGCTGTATTGTTGTA 150271 Query 214001 GATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCC 214060 || ||||| | ||||| | ||||||||| || || ||||| |||||||| | || Sbjct 150272 GACACGCAGCATAGGTACTAACCCGTTGGATATACCATTCGTTCCTGCTATATATGTTCC 150331 Query 214061 GGAGGCCCT--CAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATG 214118 || || | ||| ||| ||| |||||||||||||| | || ||||||| Sbjct 150332 TTTAGCTCTAATACAATGCACATTAAGA--CCTATGCCACCGGCCGATTTAGAGATCAAT 150389 Query 214119 GCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAG 214178 || || | | | ||| || || || | ||||| || || | | |||||| | Sbjct 150390 GCACACTGTTTGAGAGTATCGTAAATTCCCTCGATGCTATCGTCCGACATTGTCAGCAGG 150449 Query 214179 AAGCAGCTCGAGAGCTgggg 214198 |||||| ||| || || || Sbjct 150450 AAGCAGGACGACAGTTGTGG 150469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931530459523840