Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3 165 5e-35 seq4 127 1e-23 seq2 91.5 1e-12 >seq3 Length=33601328 Score = 165 bits (182), Expect = 5e-35 Identities = 595/920 (65%), Gaps = 18/920 (2%) Strand=Plus/Minus Query 475367 ACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGTATCATGGTGT 475426 || || || ||| ||||| | || || |||||||| ||||| || | || ||| | | Sbjct 573093 ACTGCAGGCGATACACATTTGGGAGGAGAAGATTTCGATAACCGAATGGTTTCACATTTT 573034 Query 475427 GTTGAAGATTTCAAGAGGAAAAATAA--AGTTGATCTTT--CAACATCTGCTAAAGCATT 475482 || ||||| || || | || ||||| || |||| ||||| | |||||| Sbjct 573033 GTGGAAGAGTTTAAACGTAAGAATAAGAAGGACATCTCGACCAACAAGCG----AGCATT 572978 Query 475483 AAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAAC 475542 | ||||| | || || || ||||| || ||||| || | || | | || || | Sbjct 572977 GCGTCGTCTACGTACGGCATGCGAACGAGCGAAGCGCACTTTGTCAGCATCAACCCAGGC 572918 Query 475543 TACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGC 475602 | ||||| | ||||| ||||| ||||| ||||||| ||||| ||| || ||||| Sbjct 572917 AAGCATTGAAATCGATTCGCTTTTCGAAGGGATTGATTTCTATACTTCTATAACGAGGGC 572858 Query 475603 TAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGT 475662 |||||||| | || ||| | || | | ||||| || || || | ||| Sbjct 572857 ACGTTTTGAAGAACTCAACTCAGATTTGTTCCGCGACACAATGGAGCCAGTGGCTAAAGC 572798 Query 475663 TCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTC 475722 | ||||| | || | || ||| | | || || || ||| | || || || || Sbjct 572797 ATTACGAGATGCCAAGATGGATAAAGGTAATATACACGATATAGTTTTGGTTGGTGGATC 572738 Query 475723 AACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAA 475781 || | ||||| ||| || ||||| | || || | |||||||| ||| |||| | Sbjct 572737 CACTCGGATTCCGAAAGTAC-AGAAACTTCTGCAGGATTTCTTTAATGGGAAAGAGTTGA 572679 Query 475782 ATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTT 475841 | || | || || || |||||||| |||||||| ||||| || ||||| || || | Sbjct 572678 ACAAATCCATCAACCCCGACGAAGCTGTCGCATATGGCGCTGCAGTGCAAGCGGCAATCT 572619 Query 475842 TATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTT 475901 || ||| | || ||| | | || | | | | || || || ||||| | Sbjct 572618 TACAAGGAGACACATCGGAGGCGGTGCAGGATTTACTTTTGCTGGATGTTACACCACTGT 572559 Query 475902 CATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTA 475961 | ||||| | ||||| | ||||| | ||||| ||| || | ||||||| ||| Sbjct 572558 CGTTAGGAATCGAAACGGCCGGAGGAGTCATGACCGTTCTGATCAAGCGAAATACCACTA 572499 Query 475962 TCCC-ATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACC 476020 | || | | | ||| | ||| ||| | || || || || |||||| | || Sbjct 572498 TACCGACGAAGCAAACCCAAAC-ATTCACTACATACTCGGACAATCAACCTGGGGTTCTA 572440 Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080 || ||| | |||||||| ||| | | || ||||| || || ||||| | ||| Sbjct 572439 ATTCAAGTATTTGAAGGAGAACGCGCTATGACGAAAGACAACAATCTTCTTGGTAAATTT 572380 Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140 | || |||||||| || ||||| | ||||| || || ||||| || || || ||| Sbjct 572379 GAACTCAGTGGTATTCCACCCGCTCCACGTGGAGTACCGCAGATTGAGGTCACATTCGAT 572320 Query 476141 ATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAA 476200 |||||||| || ||||| | ||||| ||||| ||| ||||| | |||||| || || Sbjct 572319 ATTGATGCTAACGGTATCATGAATGTATCTGCTATTGAGAAATCGACTAACAA-AG--AA 572263 Query 476201 AAT---ATAACTATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATG 476257 ||| ||||| ||||| ||| || || | | | | | || | || | |||||| Sbjct 572262 AATCGGATAACAATTACTAACGATAAGGGACGTCTAAGTAAGGAGGACATCGATCGTATG 572203 Query 476258 GTTGATGAAGCCAAAGAGTT 476277 ||| |||| || || |||| Sbjct 572202 GTTAATGAGGCAGAAAAGTT 572183 Score = 149 bits (164), Expect = 4e-30 Identities = 248/352 (70%), Gaps = 10/352 (3%) Strand=Plus/Minus Query 474518 GATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGT 474577 ||||| ||| | ||||| || ||||| ||| ||||| | | ||||| ||||||| Sbjct 573552 GATGCGAAACGGTTGATCGGCCGTAAGTTTAATGATCCAGCGGTCCAGAGTGATATGAAG 573493 Query 474578 CATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AATACACG 474635 || ||||| || | || ||| || | ||||||||| | || ||| |||||| | Sbjct 573492 CACTGGCCGTTCGAAGTTGTAAGTGACGCTGGTAAACCGAAGCTACAAGTGGAATACAAG 573433 Query 474636 CAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGA 474695 || || | ||| |||| || ||| || | || |||||||| | | ||||||| Sbjct 573432 --GGCGAGAAGAAATCGTTTTTTCCAGAAGAAGTCTCATCAATGGTGCTTACTAAAATGA 573375 Query 474696 AACAAACCGCG--AGCTCATATCTTGGACAAGAAG-TAACTGATGCAGTAATTACTGTTC 474752 | |||| || |||| || |||||| ||||| | | |||| || || || || | Sbjct 573374 AGGAAACTGCTGAAGCT--TACCTTGGA-AAGAATATTGCAAATGCGGTTATAACAGTAC 573318 Query 474753 CAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTC 474812 | || || |||||||||||||| ||||| || || || ||||| || |||||| ||| Sbjct 573317 CTGCGTACTTTAATGATTCTCAGCGTCAGGCCACAAAGGATGCAGGTGCAATTGCTGGTT 573258 Query 474813 TTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 | ||||| || ||||| || |||||||| ||||| || ||| |||| || || Sbjct 573257 TAAATGTGTTGCGTATCATCAATGAACCGACAGCTGCTGCAATTGCATACGG 573206 Score = 109 bits (120), Expect = 4e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| | || |||||||| || || || || ||||||| || | || |||| || Sbjct 573820 GCAGTCGGCATTGATTTGGGGACGACGTATTCGTGTGTAGGAGTGTTCCAGCATGGAAAG 573761 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || || || ||||| ||||| ||| |||| |||||||| || || | ||||| Sbjct 573760 GTTGATATTATCGCGAATGATCAAGGCAATCGAACCACACCATCTTACGTGGCGTTTACC 573701 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || | |||||||| ||||| || ||| |||||| ||| ||||| |||| Sbjct 573700 GATACCGAGCGACTTATTGGTGATGCAGCCAAAAATCAAGTAGCAATGAATCCAAATAAT 573641 Query 474509 ACTATTTTTG 474518 |||||||||| Sbjct 573640 ACTATTTTTG 573631 >seq4 Length=34682002 Score = 127 bits (140), Expect = 1e-23 Identities = 126/163 (77%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 817098 TAGATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAA 817157 |||||||||| || || || || ||||| |||||||| ||||||||||| |||| || | Sbjct 32678013 TAGATTTTTCTTCACCCAACATCGCAAAAGAAATGCACGTTGGACACTTGCGATCCACTA 32677954 Query 817158 TAATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAATAA 817217 ||||||| || || |||| ||| | ||| |||| || | ||| || | | |||| | Sbjct 32677953 TAATTGGAGATTCAATTTGCAGATTTCTTGAGTTTTTAGGGTTTGATGTTCTACGAATCA 32677894 Query 817218 ATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 817260 ||||||| || || ||||||||||| ||||||||| | || || Sbjct 32677893 ATCATATCGGAGACTGGGGAACACAGTTTGGTATGCTTATCGC 32677851 >seq2 Length=51801758 Score = 91.5 bits (100), Expect = 1e-12 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || ||||||||||| || |||||||| || ||||| || ||||| |||||||| Sbjct 21000448 ATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGGGAATGCCTTCCTT 21000507 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 ||| ||||||||| || || ||||| ||||| | || | | || || || | Sbjct 21000508 GTCCTGAATCTTTGCCTTCACGTTCTCAATCGTATCCGATGGCTCGA-CCTCCAGAGTGA 21000566 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || ||||| |||||||| || Sbjct 21000567 TGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTG 21000600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268170578134748