Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1 297 2e-75 seq2 116 3e-21 >seq1 Length=37976048 Score = 297 bits (328), Expect = 2e-75 Identities = 1162/1808 (64%), Gaps = 63/1808 (3%) Strand=Plus/Plus Query 138151 GATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATT 138210 ||||| || || ||||||| || |||| | | || || ||||| | | ||||||||| Sbjct 148842 GATTTGTCAACGGTAAACTGAATCGCATTAACAGCCGGCTTCGTGCGTAAATAATACATC 148901 Query 138211 CCCGTTTTTAA-CCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGT 138269 || ||||| | ||||| |||| || |||| | || || || || ||| |||| | Sbjct 148902 CCTGTTTTAAGGCCCATCTTCC-AGCCGTAGAAATGAATTGATGTTAGTTTACCGTAGTT 148960 Query 138270 CGGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAAT 138329 || | || | || || || || || ||||| || || || |||||||| Sbjct 148961 TGGCTCAGCTACGTGAATATTGAAAGACTGCGATTGATCAATAAATGCCCCTCGATCGGC 149020 Query 138330 GGCCATGTTAATTAAATTTTT-ACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAA 138388 ||||| ||||| || |||| ||| | || ||||| || || ||||| |||| || | Sbjct 149021 CGCCATTTTAATGCAAGTTTTCACTGAT-ATTTCCCAGACCGTTTTGTACAGATTGCGTA 149079 Query 138389 TATGTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTC 138448 | ||| |||| ||| | |||||||| || || ||| || | ||| ||| Sbjct 149080 TGTGTTGCGGAATTTCCTCTATATTTTGTATTGATCCATTGTGGGCCAAGATCTTGTTTT 149139 Query 138449 TCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGA 138508 |||| ||||| | | || | ||||| ||| || |||| || || || | | Sbjct 149140 TCATTTCATCATCCCAGAGCTCCAACTCAGTCAGATCCTTTAGCAAATGATGATTCACCA 149199 Query 138509 CCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACG 138568 | |||||||| || | | || | ||| ||| | ||| ||| | || || || | Sbjct 149200 CTTGAAATTCTCCTGAGAGCACCCTACGGTTGTAGACGTTTGATGTGTACGGTTCGAAAG 149259 Query 138569 ATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAG 138628 | |||||||| || || || || || || | ||||| ||||| || | | || | Sbjct 149260 ACTCGTTGTTGCCGAGGATTTGGGCAGTCGAAGCGGTTGGCATAGGAGCTAGTAGCAGCG 149319 Query 138629 AATTCCGTAAACCGT--GAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATC 138686 |||| || ||||||| | ||| ||| || ||| || | ||| | |||||| || Sbjct 149320 AATTACGCAAACCGTACGTAGCA--ATTTTTTTCTTAAGTTCAGCCCAATTCCACAATTC 149377 Query 138687 GCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTC 138746 | || || ||| |||||||||||| || | ||||| || | || || || || Sbjct 149378 TGTGGGCTTCCTGTCCCACATATCGTATTGAAGAATTCCTCTGCTAACCGGGCTTCCATC 149437 Query 138747 GTACGAATCGTATACACCAAACTCTTGCGC---CAACTCGTTGCTCGCCTCGAGCGCACC 138803 || | |||||| |||| || |||| ||||||| ||| || || || || || Sbjct 149438 ATATGTTTCGTATGGACCA---TCAAGCGCAGCCAACTCGCAGCTTGCTTCAAGTGCCCC 149494 Query 138804 ATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGG 138863 | ||||| ||||| || || ||||| | ||| |||| || | || || || || Sbjct 149495 GAAATAAATGGTTTCAAACATTTGTTGATTTAACAACTGGGCTTCTTCACTTTCATAAGG 149554 Query 138864 CATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATG 138923 ||| | || |||| || || |||| |||||||| || | || | || || || Sbjct 149555 ATGGCGCATCAAGATGAAAGCATCTGCCATGCCTTGCACTCCGATACCTATCGGACGGTG 149614 Query 138924 GCGCAGATTTGA-CGCTTTTGCGGCTTC---GATAGGATAATAGTTTACATCGATGATTT 138979 ||||| ||| || |||||| ||||| || |||||| ||||| | ||||||||||| Sbjct 149615 GCGCATATTAGATCGCTTT----GCTTCCGGGACAGGATAGTAGTTGATATCGATGATTT 149670 Query 138980 TGTTTAAATTTCGCACGACCACCTTAGTCGTA--TGCTTTA--ATCGTTCAAAATCGTAT 139035 |||| | ||| || | | || || | | || | ||||| ||| | ||||||||| Sbjct 149671 TGTTCAGATTCCG-AGTAACAGTTTTGGC-TACCTCCTTTAGCTTCG--CGAAATCGTAT 149726 Query 139036 GTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTG 139095 || || | || | ||||| |||| | | |||||||| | || Sbjct 149727 GT----ACGAT--------CGGGTTTTACAAACATGTTTAGAGCGATCGAGGCCAGATTA 149774 Query 139096 CACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACAC 139155 ||||| || | ||| || |||||| |||||||||| |||| || |||| Sbjct 149775 CACACAGCAATTTCATCTTTTGAAGAGTATTCCACAATTTCGGTGCACAGGTTTGAACAC 149834 Query 139156 TTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATA 139215 |||||||| || | |||||||| || || ||||| || || ||||||||||| ||||| Sbjct 149835 TTGATCGTTCCAACGTTTTGTTGGTTACTCTTTCGATTGCACGCATCTTTGTAGAGCATG 149894 Query 139216 TACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGT 139275 || || ||||| || || || | |||||| ||| |||| || || | Sbjct 149895 TAAGGCACTCCAGTCTCAACCTGCGACTCTATGATGGCGAACCACAAATCTTGCGCCTTA 149954 Query 139276 ATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCA 139335 | || ||| | || | | ||||||||||| |||||||| | ||| ||| Sbjct 149955 ACCTGTCGCGTGAAACGACCCTCGCGCTCGTAGCCAGTGTAGAGTTTTTGGAACTCCTCA 150014 Query 139336 CCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTC 139395 || | | || || | | | |||| | || || ||||| | ||| | |||| Sbjct 150015 CCCCATGTCTCCGACAAACCAGGACAATCGTGGGGGCACATTAAACTCCACATTTCGTTT 150074 Query 139396 GCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC----GCG 139451 || | ||| ||| |||||||| ||| |||||||||| |||| | | || || ||| Sbjct 150075 GCTTCGACACGCTGCATGAACAAATCAGGAATCCACAGAGCGTAGAACATGTCTCTAGCG 150134 Query 139452 C-GCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAG 139510 | | | |||| | || ||| |||| ||| | || | || ||||| | || Sbjct 150135 CGGACCTCTTCTTTT-----CCCGTGTTCTTTTTAAGGTCCAAAAACTCAAATATATCCC 150189 Query 139511 CGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGA 139567 | |||||||| |||| ||| || || | ||| || || ||| ||||| || || | Sbjct 150190 CATGCCATGGCTCCAAATAAATAGCAAATGCCCCAGGTCGCTTGTTACCACCCTGGTCCA 150249 Query 139568 CGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGT----T 139623 ||| || | | ||| ||| | || |||| ||| || | | ||| | | | | | Sbjct 150250 CGTAACGCGCTGTATTGTTGTAGACACGCAGCATAGGTACTAACCCGTTGGATATACCAT 150309 Query 139624 CCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATT 139683 |||| ||||| ||| || | ||||| | ||| ||||| | || || Sbjct 150310 TCGTTCCTGCTATATATGTTCCTTT----AGCTCTAATACAATGCACATTAAGACCTATG 150365 Query 139684 CCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATG 139743 || ||| | |||| || || || | || | | || ||||| || || ||| Sbjct 150366 CCACCGGCCGATTTAGAGATCAATGCACACTGTTTGAGAGTATCGTAAATTCCCTCGATG 150425 Query 139744 CTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCT 139803 || |||||| ||| || | ||| ||||| ||||| ||||| ||| ||| || | || Sbjct 150426 CTATCGTCCGACATTGTCAGCAGGAAGCAGGACGACAGTTGTGGTCGTTGAGTTGCTGCA 150485 Query 139804 GCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCG 139863 ||||||| || || |||||||| || | | | |||| ||| | |||||| || Sbjct 150486 GCAAACATGGTTGGCGAGGCGTGCGTAAAGTATCGCTCAGACAGCAAGTTGTACGTCTCA 150545 Query 139864 ATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGG 139923 || || |||| || || || || |||| || || ||||| ||||| ||||| Sbjct 150546 ATTGCAGCATCAATGTCTGCACCATGTATGCCGATAGCAACACGCATGAGCATGTGTTGT 150605 Query 139924 ATCCGTTC 139931 |||||| Sbjct 150606 GGCCGTTC 150613 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | |||||||| ||||| || || || || ||||| || || |||| | Sbjct 36315560 ATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTCGAGGTCGA-GCCATC 36315618 Query 24764 G-ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 | |||| | || | || || |||||||| ||||| || ||||| || || ||||| Sbjct 36315619 GGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 36315678 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| ||||| || |||||||||||| | | | | || || || || Sbjct 36315679 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTTTCGGACTACAA 36315738 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| ||||| || || | || ||||| | || || || Sbjct 36315739 CATCCAGAAGGAGTCGACCCTGCATCTTGTACTGCGACTTCGTGGTGG 36315786 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||||||||| | ||||| || || ||||| || || || || || || || || Sbjct 21735490 ACGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATCACCCTTGAGGTCGAGCCC 21735431 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | || | || || |||||||| ||||| || || || || || ||| Sbjct 21735430 TCGGATACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGAT 21735371 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || ||| | ||||| ||||| || |||||||| || | | | |||| || || Sbjct 21735370 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAAGACGGACGTACCCTGTCCGACTAC 21735311 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| || ||||| ||||| || ||| ||||| |||| Sbjct 21735310 AACATCCAGAAGGAGTCGACGCTTCACCTGGTGCTGCG 21735273 >seq2 Length=51801758 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || || || || | | Sbjct 36664692 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCTTCG 36664751 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || || || ||||| ||||| Sbjct 36664752 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAG 36664811 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| ||||| || ||||||||||| | | | |||| ||||||||| Sbjct 36664812 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACCCTGTCCGATTATAAC 36664871 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || |||||||| | || |||| || || Sbjct 36664872 ATCCAGAAGGAGTCGACCCTGCACTTGGTCCTCCGTCTGCGTGGTGG 36664918 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || || || || || || |||| | Sbjct 21000603 ATGCAGATTTTCGTGAAGACCCTGACAGGAAAGACCATCACTCTGGAGGTCGA-GCCATC 21000545 Query 24764 G-ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 | | || | || | || || |||||| || ||||| ||||| || || || ||||| Sbjct 21000544 GGATACGATTGAGAACGTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCA 21000485 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||| || || || |||||||||||| | | |||| || || || Sbjct 21000484 GCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGCACGCTGTCCGACTACAA 21000425 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || |||||||| | || |||| || || Sbjct 21000424 CATCCAGAAGGAGTCTACGCTGCACTTGGTCCTACGTCTGCGTGGTGG 21000377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896469632280