Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3 138 8e-27 seq2 100 2e-15 seq4 96.9 3e-14 >seq3 Length=33601328 Score = 138 bits (152), Expect = 8e-27 Identities = 141/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 ||||||||||||| ||||||| | ||| |||||| |||||||||||| ||||| || Sbjct 573631 CAAAAATAGTATTATTTGGATTCATTGCTACTTGATTTTTGGCTGCATCACCAATAAGTC 573690 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 | || || || ||||| | || || ||||| || || ||||| |||||||||||||| | Sbjct 573691 GCTCGGTATCGGTAAACGCCACGTAAGATGGTGTGGTTCGATTGCCTTGATCATTCGCGA 573750 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 |||| ||||| || |||| || | || |||||||| | | || || || ||||||| Sbjct 573751 TAATATCAACCTTTCCATGCTGGAACACTCCTACACACGAATACGTCGTCCCCAAATCAA 573810 Query 282870 TACC 282873 | || Sbjct 573811 TGCC 573814 >seq2 Length=51801758 Score = 100 bits (110), Expect = 2e-15 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 282671 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTG 282730 || || ||||| || || || || || || ||||| || || | || | || | ||| Sbjct 30116719 CCGATCAATCGCTTGGCGTCGAAGATTGTGTTGGTCGGGTTCATGGCCACCTGGTTCTTG 30116660 Query 282731 GCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGA 282790 || ||||| || |||||| | || || || || || | ||| || || || || ||||| Sbjct 30116659 GCAGCATCACCGATCAGACGCTCGGTGTCGGTGAAGGCAACGTAGGACGGGGTCGTGCGG 30116600 Query 282791 TTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTA 282850 || || || || || |||||||||||||| || |||| || | || || || || || Sbjct 30116599 TTGCCCTGGTCGTTGGCAATAATTTCAACCTTGCCATGCTGAAACACTCCAACGCAGCTG 30116540 Query 282851 AAAGTTGTTCCTAAATCAATACC 282873 | || ||||| | ||||||||| Sbjct 30116539 TAGGTCGTTCCCAGATCAATACC 30116517 >seq4 Length=34682002 Score = 96.9 bits (106), Expect = 3e-14 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 637121 TTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGAT 637180 ||||||| |||| |||||| || || || || ||||||||||| ||||||| || ||| Sbjct 32678019 TTATTGTAGATTTTTCTTCACCCAACATCGCAAAAGAAATGCACGTTGGACACTTGCGAT 32677960 Query 637181 CAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATC 637240 | ||||| ||||| || || ||||| || | | || | | || |||||| | Sbjct 32677959 CCACTATAATTGGAGATTCAATTTGCAGATTTCTTGAGTTTTTAGGGTTTGATGTTCTAC 32677900 Query 637241 GTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTAT 637293 | || |||||| | || || |||||||| || || |||||| | || ||| || Sbjct 32677899 GAATCAATCATATCGGAGACTGGGGAACACAGTTTGGTATGCTTATCGCTCAT 32677847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740620531749426