Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01]
201 sequences; 173,339,239 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq2 158 2e-33
seq3 86.0 1e-11
>seq2
Length=51801758
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || | || ||| || || |||||||| ||||| || ||||| || || || || ||
Sbjct 21000377 CCACCACGCAGACGTAGGACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGGAC 21000436
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | ||| || || || || |||||||| ||||| || | || |||||||| ||
Sbjct 21000437 AGCGTGCGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGGGA 21000496
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| |||||||| || ||||||||||| || || || ||||||||||| || || ||
Sbjct 21000497 ATGCCTTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCAATCGTATCCGATGGCTCGACC 21000556
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| ||| || ||||| ||||||| ||||| || || ||||||||
Sbjct 21000557 TCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCAT 21000603
Score = 140 bits (154), Expect = 6e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || | || ||| || || |||||||| || || || ||||| || |||||||| ||
Sbjct 36664918 CCACCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGAC 36664859
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | ||||| || || || || || || ||||| | | || |||||||||||
Sbjct 36664858 AGGGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 36664799
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| || ||||| || || ||||| || || || || || || ||||| ||| || ||
Sbjct 36664798 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCCGAAGGCTCCACC 36664739
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| ||| || |||||||| ||||| ||||| || || ||||||||
Sbjct 36664738 TCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 36664692
>seq3
Length=33601328
Score = 86.0 bits (94), Expect = 1e-11
Identities = 212/318 (67%), Gaps = 4/318 (1%)
Strand=Plus/Minus
Query 198310 AACTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAA 198369
|||| |||| ||| |||| || || || ||||| | | || |||||||| | |
Sbjct 31446281 AACTGGAAACGGCAAAAACCCACGATGACCTGTGGAACTCGGCCCAGCTACAGATGGTGA 31446222
Query 198370 GAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGA 198429
||||| || ||||| | ||| | | ||||||||||| || || || || || ||||
Sbjct 31446221 AGGAAGGCAAGATGCACGGATTTCTGCGCATGTACTGGGCGAAGAAAATCCTCGAGTGGA 31446162
Query 198430 CAAGAACACCGGAAGACGC-TTTGAGTTATAG-TATCTATCTAAACAATAAGTACGAACT 198487
| | | | |||||||| || | ||| | | |||||| || ||| || ||| |
Sbjct 31446161 CTAAATCGCCGGAAGAGGCGCTCGAG--ACCGCTATCTACCTCAACGATCGCTACAGCTT 31446104
Query 198488 AGACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGA 198547
||||| ||||| ||||| ||||| ||||| |||||||| || || | |||||
Sbjct 31446103 GGACGGGCGCGATCCGAACGGGTACGTTGGTTGCATGTGGTCGATCGCTGGCATCCATGA 31446044
Query 198548 TCGAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTTC 198607
|| | ||||| || | || || || ||||| | || ||||| || || || |
Sbjct 31446043 TCAGGGTTGGAAGGAGCGCGAAATTTTCGGCAAGATCCGCTACATGAACTACGAAGGATG 31445984
Query 198608 TAAGAAAAAATTTGATGT 198625
|| ||| || |||||
Sbjct 31445983 CAAACGAAAGTTCGATGT 31445966
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981824671488139
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |