Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2 158 2e-33 seq3 86.0 1e-11 >seq2 Length=51801758 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || |||||||| ||||| || ||||| || || || || || Sbjct 21000377 CCACCACGCAGACGTAGGACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGGAC 21000436 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || || || || |||||||| ||||| || | || |||||||| || Sbjct 21000437 AGCGTGCGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGGGA 21000496 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || ||||||||||| || || || ||||||||||| || || || Sbjct 21000497 ATGCCTTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCAATCGTATCCGATGGCTCGACC 21000556 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||| || ||||| ||||||| ||||| || || |||||||| Sbjct 21000557 TCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCAT 21000603 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || |||||||| || || || ||||| || |||||||| || Sbjct 36664918 CCACCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGAC 36664859 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || || || ||||| | | || ||||||||||| Sbjct 36664858 AGGGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 36664799 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || || || || || ||||| ||| || || Sbjct 36664798 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCCGAAGGCTCCACC 36664739 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||| || |||||||| ||||| ||||| || || |||||||| Sbjct 36664738 TCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 36664692 >seq3 Length=33601328 Score = 86.0 bits (94), Expect = 1e-11 Identities = 212/318 (67%), Gaps = 4/318 (1%) Strand=Plus/Minus Query 198310 AACTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAA 198369 |||| |||| ||| |||| || || || ||||| | | || |||||||| | | Sbjct 31446281 AACTGGAAACGGCAAAAACCCACGATGACCTGTGGAACTCGGCCCAGCTACAGATGGTGA 31446222 Query 198370 GAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGA 198429 ||||| || ||||| | ||| | | ||||||||||| || || || || || |||| Sbjct 31446221 AGGAAGGCAAGATGCACGGATTTCTGCGCATGTACTGGGCGAAGAAAATCCTCGAGTGGA 31446162 Query 198430 CAAGAACACCGGAAGACGC-TTTGAGTTATAG-TATCTATCTAAACAATAAGTACGAACT 198487 | | | | |||||||| || | ||| | | |||||| || ||| || ||| | Sbjct 31446161 CTAAATCGCCGGAAGAGGCGCTCGAG--ACCGCTATCTACCTCAACGATCGCTACAGCTT 31446104 Query 198488 AGACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGA 198547 ||||| ||||| ||||| ||||| ||||| |||||||| || || | ||||| Sbjct 31446103 GGACGGGCGCGATCCGAACGGGTACGTTGGTTGCATGTGGTCGATCGCTGGCATCCATGA 31446044 Query 198548 TCGAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTTC 198607 || | ||||| || | || || || ||||| | || ||||| || || || | Sbjct 31446043 TCAGGGTTGGAAGGAGCGCGAAATTTTCGGCAAGATCCGCTACATGAACTACGAAGGATG 31445984 Query 198608 TAAGAAAAAATTTGATGT 198625 || ||| || ||||| Sbjct 31445983 CAAACGAAAGTTCGATGT 31445966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981824671488139