Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1 172 5e-38 seq3 116 4e-21 seq2 96.9 3e-15 >seq1 Length=37976048 Score = 172 bits (190), Expect = 5e-38 Identities = 680/1057 (64%), Gaps = 21/1057 (2%) Strand=Plus/Plus Query 146575 GCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCG-CCACGAGTGATT 146633 || || || ||||| ||||||||||| || ||||| ||||| |||| ||| || Sbjct 148875 GCCGGCTTCGTGCGTAAATAATACATCCCTGTTTTAAGGCC-CATCTTCCAGCCGTAGAA 148933 Query 146634 GTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGGCT 146693 ||||| || || | | |||| | ||||| || ||| || ||| || || || Sbjct 148934 ATGAATTGATGTTAGTTTACCGTAGTTTGGCTCAGCTACGTGAATATTGAAAGACTGCGA 148993 Query 146694 TTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAAT-CATGCGTTTTGTCTTC-ATT 146751 |||||| || || || || ||||||||||| | ||| || | |||| || ||| Sbjct 148994 TTGATCAATAAATGCCCCTCGATCGGCCGCCATTTTAATGCAAG--TTTTCACTGATATT 149051 Query 146752 TCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAATA 146811 ||||| | ||||||||||| | | | ||||| | || || ||||| || Sbjct 149052 TCCCAGACCGTTTTGTACAGATTGCGTATGTGTTGCGGAATTTCCTCTATATTTTGTATT 149111 Query 146812 GAGCCCTTGTGCGCAAAAATAGTGTTTCGTATTTCGGGCGTGTAAAGGTTTAGTTTAATG 146871 || || ||||| || || || ||||| ||||| | || | | | | | Sbjct 149112 GATCCATTGTGGGCCAAGATCTTGTTTTTCATTTCATCATCCCAGAGCTCCAACTCAGTC 149171 Query 146872 AGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGA 146931 || || | | |||| ||||| ||||||||||| || || | ||||| | | | Sbjct 149172 AGATCCTTTAGCAAATGATGATTCACCACTTGAAATTCTCCTGAGAGCACCCTACGGTTG 149231 Query 146932 TACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTT 146991 || || || ||| | || || |||||||| || ||||| | |||||||| || | Sbjct 149232 TAGACGTTTGATGTGTACGGTTCGAAAGACTCGTTGTTGCCGAGGATTTGGGCAGTCGAA 149291 Query 146992 GCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCC 147051 ||||| ||||| || | | || ||||| |||| |||||||| | || || | | Sbjct 149292 GCGGTTGGCATAGGAGCTAGTAGCAGCGAATTACGCAAACCGTACGTAGCAATTTTTTTC 149351 Query 147052 TTCAAAGTT--TGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGA 147109 || ||||| ||| | ||||| | |||| || || |||||| ||||| || | Sbjct 149352 TT--AAGTTCAGCCCAATTCCACAATTCTGTGGGCTTCCTGTCCCACATATCGTATTGAA 149409 Query 147110 GCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCA 147169 | | ||||| || | || || ||| | | || ||| || || || |||| Sbjct 149410 GAATTCCTCTGCTAACCGGGCTTCCATCATATGTTTCGTATGGACCATCAAGCGCAGCCA 149469 Query 147170 ATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGA 147229 | || |||||||| || || || || | || |||||||| ||||||| |||| | Sbjct 149470 ACTCGCAGCTTGCTTCAAGTGCCCCGAAATAAATGGTTTCAAACATTTGTTGATTTAACA 149529 Query 147230 CGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCT 147289 |||||||| || || ||||| |||| | | || ||||| |||| || | Sbjct 149530 ACTGGGCTTCTTCACTTTCATAAGGATGGCGCATCAAGATGAAAGCATCTGCCATGCCTT 149589 Query 147290 GGATACCGACGCCGATAGGTCGAT-GCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGA 147348 | | |||| || || || || | || | | | | ||||| || || | ||| Sbjct 149590 GCACTCCGATACCTATCGGACGGTGGCGCATATTAGAT-CGCTTTGCTTCCGGGACAGGA 149648 Query 147349 TAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTG 147408 |||| |||| ||| || || ||||| || || || ||| ||| | || || Sbjct 149649 TAGTAGTTGATATCGATGATTTTGTTCAGATTCCGAGTAACAGTTTTGGCTACCTCCTTT 149708 Query 147409 AGTTTCTCGAAATCATAAGTCC---CGTCTTCGACACGTACGCATTGGTTCACGGCGATA 147465 || ||| ||||||| || || | || || || | ||| ||| | ||||| Sbjct 149709 AGCTTCGCGAAATCGTATGTACGATCGGGTTTTAC----AAACAT--GTTTAGAGCGATC 149762 Query 147466 GACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCAC 147525 || |||||||| || || || | || || ||| | ||| ||||||| |||| Sbjct 149763 GAGGCCAGATTACACACAGCAATTTCATCTTTTGAAGAGTATTCCACAATTTCGGTGCAC 149822 Query 147526 AGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCT 147585 ||||| || || || ||| | ||||| || || || || ||||||||||| ||| Sbjct 149823 AGGTTTGAACACTTGATCGTTCCAACGTTTTGTTGGTTACTCTTTCGATTGCACGCATCT 149882 Query 147586 TTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCG 147622 ||| |||||||||| || | || ||||| || |||| Sbjct 149883 TTGTAGAGCATGTAAGGCACTCCAGTCTCAACCTGCG 149919 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||||| |||| || | | ||||| || || |||||||||||| || ||| Sbjct 21735266 ACGGAGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 21735325 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||||| ||||| || |||| |||| |||||||| ||||| || || ||||| Sbjct 21735326 ACGTCCGTCTTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGAATGCC 21735385 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | ||||| | ||||| || || | Sbjct 21735386 CTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAG 21735445 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || ||||| || || ||||| | ||| |||||||| Sbjct 21735446 GGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 21735487 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | ||||| || || ||||||||||| | |||||| | Sbjct 36315774 CGCAGTACAAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCA 36315715 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| |||| |||||||| |||||||| || || || || || Sbjct 36315714 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTG 36315655 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || || | ||||| || |||| || | Sbjct 36315654 TCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCCGATGGCTCGACCTCGAGTGTGATG 36315595 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || ||||| | |||||||||||| Sbjct 36315594 GTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 36315560 >seq3 Length=33601328 Score = 116 bits (128), Expect = 4e-21 Identities = 268/399 (67%), Gaps = 11/399 (3%) Strand=Plus/Plus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACGCTGGCCGAGCGCATG 46835 ||||| | ||||| ||||| |||||| |||| ||| |||| | |||||| || Sbjct 22123270 AAGGCGGACTGGGCGATGAACTGGATCTCGAGCAAGAAGGCCAACTACGGCGAGCGTATC 22123329 Query 46836 GTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTAC 46895 ||||| ||||| ||||| ||| | || || ||||| ||||| ||||| || | Sbjct 22123330 GTGGCGTTCGCAGCTGTCGAGGGCATCTTCTTCAGCGGCAGCTTTGCGGCCATCTTCTGG 22123389 Query 46896 ATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGAC 46955 | || | ||| | |||||||| |||||||| || ||||||||||||||||| Sbjct 22123390 CTGAAGAAGCGTGGCCTGATGCCGGGTTTGACGTTCTCCAATGAGTTGATCTCGCGCGAT 22123449 Query 46956 GAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAATTA 47015 ||||| | || |||||||| |||||| | |||| | ||| |||| | Sbjct 22123450 GAAGGTTTGCATTGCGACTTTGCCTGTCTCATGTTCAAGTATC---TGATACAGAAGCCA 22123506 Query 47016 AACTCGGACACGATCCTGA---GCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTT 47072 ||| || | ||| ||| | |||| ||||| ||||| ||||||| Sbjct 22123507 ---TCGCGCAAGCGTGTGACGGACATTATCCGGGATGCGGTTGCAATCGAGCAGGAGTTC 22123563 Query 47073 TTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAA-CGCACAGTCTATGTGCGAATA 47131 | || || ||||| |||| || |||||||||| || | || |||| | | || Sbjct 22123564 CTGACCAAAGCACTGCCAGTCGATATGTTGGGCATGAATTGCGAACTC-ATGTCCCAGTA 22123622 Query 47132 TATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG 47170 || ||||||||||||||||| ||| ||||| |||| || Sbjct 22123623 CATCGAGTTTGTGGCGGATCGGCTGCTGGTGGAGCTGGG 22123661 >seq2 Length=51801758 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | ||||| || || |||||||||||| || || Sbjct 21000382 ACGCAGACGTAGGACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGGACAGCGT 21000441 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || || | |||| |||||||| |||||||| || ||||| Sbjct 21000442 GCGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGGGAATGCC 21000501 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||| ||| |||| | || | ||||| | ||||| || || | Sbjct 21000502 TTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCAATCGTATCCGATGGCTCGACCTCCAG 21000561 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || ||||| || || | ||||||||||||| Sbjct 21000562 AGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCATG 21000604 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | | ||||| || || ||||| || ||| || ||| Sbjct 36664913 ACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGACAGGGT 36664854 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| || || ||||| || |||| |||| | |||||| ||||||||||| ||||| Sbjct 36664853 ACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCC 36664794 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | ||||| | |||||||| || | Sbjct 36664793 CTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCCGAAGGCTCCACCTCCAG 36664734 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||||| || || | ||| |||||||| Sbjct 36664733 AGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 36664692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610002514360