Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4 127 3e-23 seq3 120 4e-21 seq33 118 2e-20 >seq4 Length=34682002 Score = 127 bits (140), Expect = 3e-23 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| || || |||| |||| ||| ||| | Sbjct 26230490 ATCTACAAGGTGCTGAAGCAGGTCCATCCGGACACCGG-----CATC-TCCTCGAAGGCG 26230437 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || || |||||||| |||| ||||| | | ||||||| Sbjct 26230436 ATGAGCATCATGAACAGCTTCGTGAACGACATCTTCGAGCGCATTGCCGCCGAGGCATCC 26230377 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||||| || ||||||||| |||||| | ||||| ||||| ||||| || Sbjct 26230376 CGTCTGGCGCACTACAACAAGCGTTCGACGATCACGTCTCGCGAAATCCAAACCGCTGTC 26230317 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| | ||| ||| || ||||||| |||||||||||| ||||| || Sbjct 26230316 CGTCTGCTGTTGCCCGGTGAGCTGGCCAAGCACGCCGTCTCTGAGGGAAC 26230267 Score = 127 bits (140), Expect = 3e-23 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| || || |||| |||| ||| ||| | Sbjct 26243926 ATCTACAAGGTGCTGAAGCAGGTCCATCCGGACACCGG-----CATC-TCCTCGAAGGCG 26243979 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || || |||||||| |||| ||||| | | ||||||| Sbjct 26243980 ATGAGCATCATGAACAGCTTCGTGAACGACATCTTCGAGCGCATTGCCGCCGAGGCATCC 26244039 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||||| || ||||||||| |||||| | ||||| ||||| ||||| || Sbjct 26244040 CGTCTGGCGCACTACAACAAGCGTTCGACGATCACGTCTCGCGAAATCCAAACCGCTGTC 26244099 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| | ||| ||| || ||||||| |||||||||||| ||||| || Sbjct 26244100 CGTCTGCTGTTGCCCGGTGAGCTGGCCAAGCACGCCGTCTCTGAGGGAAC 26244149 >seq3 Length=33601328 Score = 120 bits (132), Expect = 4e-21 Identities = 188/265 (71%), Gaps = 3/265 (1%) Strand=Plus/Plus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 ||||||| || || || ||||| | ||| |||||||| || |||| | ||| Sbjct 22122871 AGGCCGAAGCTTCTTTCTGGACGGTCGAAGAGGTCGATCTATCTAAGGACATGAAAGACT 22122930 Query 1455856 GGGTGTCGCTGAGCGACGA-CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914 ||| |||||| | ||| |||||| || || ||| ||| || |||||||| ||| || Sbjct 22122931 GGGATGCGCTGAA-GCCGAGCGAGCGTCACTTTATCTCGCATGTGCTCGCCTTCTTT-GC 22122988 Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974 |||| |||||| |||||| ||| || |||| || || || | | ||||| || | Sbjct 22122989 CGCCTCCGATGGTATCGTGAACGAAAATCTGGTCGAACGGTTCAGCCAGGAGGTTCAGGT 22123048 Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 | | ||||| || | || || || ||||||||||| || |||||| | ||| || | Sbjct 22123049 GACGGAGGCTCGCTGTTTCTATGGTTTCCAGATCGCTATGGAAAACGTGCACAGCGAGAT 22123108 Query 1456035 CTACTCGCTCCTGATCGACACCTAC 1456059 |||||||| || |||||||| ||| Sbjct 22123109 GTACTCGCTGCTTATCGACACATAC 22123133 Score = 114 bits (126), Expect = 2e-19 Identities = 138/183 (75%), Gaps = 11/183 (6%) Strand=Plus/Plus Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC--- 1456152 |||||||| ||| |||||| |||| | ||||| |||||||||||||| |||||| Sbjct 22123240 GCCATCGAGACGCTGCCGTGTGTGAAGCGTAAGGCGGACTGGGCGATGAACTGGATCTCG 22123299 Query 1456153 AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCA 1456211 | |||| ||| | | || | |||||| |||| | || || || |||||||||| Sbjct 22123300 AGCAAGAAGGCCAACTAC-----GGCGAGCGTATCGTGGCGTTCGCAGCTGTCGAGGGCA 22123354 Query 1456212 TCTTTTTCTCGGGCAGTTTCTGC-GCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCC 1456270 |||| ||| ||||| || ||| |||||||| ||||| |||||||| ||||| ||||| Sbjct 22123355 TCTTCTTCAGCGGCAGCTT-TGCGGCCATCTTCTGGCTGAAGAAGCGTGGCCTGATGCCG 22123413 Query 1456271 GGT 1456273 ||| Sbjct 22123414 GGT 22123416 Score = 107 bits (118), Expect = 3e-17 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 332923 CGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAG 332982 ||||||||||||||| || || |||||||| ||| | | ||||||| || |||||| Sbjct 19919066 CGTGTTGCAGGCCAGCGCGAAGCGCGTCGTGTTGCTGTAGATTTCCATCGTACGCCGGAG 19919125 Query 332983 GGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCG 333042 |||||| ||||| || || | || ||| || |||||||| || | ||||||||| | Sbjct 19919126 GGCCTGCTGGGCACCCTCGGTCATGCTGTCCGCTTCGTCGAGAATAACGATCTTGTGTCT 19919185 Query 333043 CCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTC 333102 || ||||||| ||| | | | ||| ||||| | || ||||| || || Sbjct 19919186 GCCACGCGGCAGTGTTACCTTCTGCTGGGCAAACATCTTGATTTTGTTCCGCACCACATC 19919245 Query 333103 CACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTC 333144 | || || || | ||| ||||| || ||||||||||| || Sbjct 19919246 GATACCCCGTTCATTCGATGCGTTCAGCTCGAGCACGGCTTC 19919287 >seq33 Length=8323 Score = 118 bits (130), Expect = 2e-20 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| || |||||||| ||||| ||| | ||| |||| ||| | Sbjct 7137 ATCTACAAGGTCCTGAAGCAGGTCCACCCGGACACC-----GGCAT-CTCCTCGAAGGCG 7190 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || || |||||||| |||| ||||||| | | ||||| Sbjct 7191 ATGAGCATCATGAACAGCTTCGTGAACGACATCTTCGAGCGCATCGCCGCTGAGGCGTCC 7250 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||||| || |||||||||| |||||| | ||||| ||||| |||||||| Sbjct 7251 CGTTTGGCGCACTACAACAAGCGCTCGACGATCACGTCCCGCGAAATCCAAACCGCCGTC 7310 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || | ||| || || |||||| ||||||||| |||||||| || Sbjct 7311 CGTTTGCTGCTGCCTGGTGAGTTGGCCAAGCACGCCGTTTCCGAGGGAAC 7360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177791813180562