Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2 131 2e-25 seq1 125 6e-24 seq3 111 1e-19 >seq2 Length=51801758 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | ||||| || | || |||||| || ||||| ||||||| Sbjct 36664920 TTCCACCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGG 36664861 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || ||| || |||| ||||||||||| || || || ||||| |||||||| || | || Sbjct 36664860 ACAGGGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAG 36664801 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| || |||||||||| |||||| ||||| | | | || || | |||| Sbjct 36664800 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCCGAAGGCTCCA 36664741 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCT 35739 |||||| ||||| || || || ||||| || ||||| || |||||||| || Sbjct 36664740 CCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATACT 36664689 Score = 109 bits (120), Expect = 5e-19 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | ||||| || | |||| |||||| || |||||||| |||| Sbjct 21000375 TTCCACCACGCAGACGTAGGACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGG 21000434 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || || || | || ||||||||||| || || || || | |||||||| || | | Sbjct 21000435 ACAGCGTGCGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGG 21000494 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGAT---T 35684 ||| || ||||||||| |||||| ||||| | | | ||| || |||| | Sbjct 21000495 GAATGCCTTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCAATCGTATC---CGATGGCT 21000551 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | ||||||| ||||| || || || |||| || ||||| || |||||||| Sbjct 21000552 CGACCTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCAT 21000603 >seq1 Length=37976048 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | ||| |||||| || |||||||| |||| | Sbjct 21735261 CCACCACGGAGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 21735320 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| ||||||||||| || || || || | |||||||| |||| ||| Sbjct 21735321 AGGGTACGTCCGTCTTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGA 21735380 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | | ||| || | || ||| Sbjct 21735381 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 21735440 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || |||||||| | ||||| || || |||||||| Sbjct 21735441 TCAAGGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 21735487 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || | || ||||||||||| || || || Sbjct 36315751 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAA 36315692 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||| || | || | | |||||||||| |||||| ||||| | | Sbjct 36315691 GATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 36315632 Query 35665 TGCCACCGTGTCGCTCGAT---TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| || ||||| | ||||| || || || || | ||||| Sbjct 36315631 CTCGATGGTGTC---CGATGGCTCGACCTCGAGTGTGATGGTCTTGCCGGTGAGCGTTTT 36315575 Query 35722 CACAAATATCTGCATTCTG 35740 ||| || ||||||||| || Sbjct 36315574 CACGAAAATCTGCATTTTG 36315556 >seq3 Length=33601328 Score = 111 bits (122), Expect = 1e-19 Identities = 208/303 (69%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 44118 ACCCATGATCCTTTGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCAC 44177 ||||| ||| |||||||| | ||||| ||| || || ||||| || |||||| Sbjct 31446264 ACCCACGATGACCTGTGGAACTCGGCCCAGCTACAGATGGTGAAGGAAGGCAAGATGCAC 31446205 Query 44178 CAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACC 44237 || |||| ||||| ||| ||||| || | |||||| | || || || Sbjct 31446204 GGATTTCTGCGCATGTACTGGGCGAAGAAAATCCTCGAGTGGACTAAATCGCCGGAAGAG 31446145 Query 44238 GCGCTCGTTCATGCCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAAC 44297 ||||||| || ||||| || ||||| ||||| |||||||| ||||| || ||| Sbjct 31446144 GCGCTCGAGACCGCTATCTACCTCAACGATCGCTACAGCTTGGACGGGCGCGATCCGAAC 31446085 Query 44298 GGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CAGGGCGTGGCGAGAGCT 44356 |||||||| || || |||||||| || || |||| || ||||| ||| |||| Sbjct 31446084 GGGTACGTTGGTTGCATGTGGTCGATCGCTGGCATCCATGATCAGGG-TTGGAAGGAGCG 31446026 Query 44357 ACCCATCTACGGCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGT 44416 || | |||||| | ||||||||||||||| | || ||| ||||||| ||||| Sbjct 31446025 CGAAATTTTCGGCAAGATCCGCTACATGAACTACGAAGGATGCAAACGAAAGTTCGATGT 31445966 Query 44417 AAA 44419 || Sbjct 31445965 CAA 31445963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450792467381080