Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1 147 2e-30 seq3 140 3e-28 seq2 105 7e-18 >seq1 Length=37976048 Score = 147 bits (162), Expect = 2e-30 Identities = 330/491 (67%), Gaps = 10/491 (2%) Strand=Plus/Minus Query 8500 ATCATTGATGTCAATTTTTATCCCTT---GGAAGAAGCGCGCGTATCGAACATGCGCCAC 8556 ||||| ||| |||| | ||||| | ||||| | ||| ||| || ||||||||| Sbjct 149668 ATCATCGATATCAACTACTATCCTGTCCCGGAAGCAAAGCG---ATCTAATATGCGCCAC 149612 Query 8557 AGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCC 8616 | || | || | || |||||||| |||| || || || | || |||||| || Sbjct 149611 CGTCCGATAGGTATCGGAGTGCAAGGCATGGCAGATGCTTTCATCTTGATGCGCCATCCT 149552 Query 8617 TACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGC 8676 || ||||| ||||||| | || | || | |||| ||||| | |||| ||| Sbjct 149551 TATGAAAGTGAAGAAGCCCAGTTGTTAAATCAACAAATGTTTGAAACCATTTATTTCGGG 149492 Query 8677 GCATTAGAAGCCAGCTGTCAACTTGCCCGAGAAT--TGGGCACGTACGAATCGTACGCGG 8734 ||| | ||||| ||||| | | ||| | | | | ||| | | |||||| | || | | Sbjct 149491 GCACTTGAAGCAAGCTG-CGAGTTGGCTGCGCTTGATGGTC-CATACGAAACATATGATG 149434 Query 8735 GCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGTCACGCCCACCTCTT 8794 | ||||| | ||| | ||||| | |||||||| |||||| | | |||||| | Sbjct 149433 GAAGCCCGGTTAGCAGAGGAATTCTTCAATACGATATGTGGGACAGGAAGCCCACAGAAT 149374 Query 8795 TGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGT 8854 ||||||||||| || | || ||||||||| | ||||||||| ||||||||| Sbjct 149373 TGTGGAATTGGGCTGAACTTAAGAAAAAAATTGCTACGTACGGTTTGCGTAATTCGCTGC 149314 Query 8855 TGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTG 8914 | | ||| ||||| ||||| ||||||| ||||| | || |||||||| || || | Sbjct 149313 TACTAGCTCCTATGCCAACCGCTTCGACTGCCCAAATCCTCGGCAACAACGAGTCTTTCG 149254 Query 8915 AGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTTTTTAATGCTGA 8974 | |||| ||| ||||| ||| | | ||| | | || || ||| | || ||| Sbjct 149253 AACCGTACACATCAAACGTCTACAACCGTAGGGTGCTCTCAGGAGAATTTCAAGTGGTGA 149194 Query 8975 ATCGTCATTTG 8985 ||| ||||||| Sbjct 149193 ATCATCATTTG 149183 Score = 122 bits (134), Expect = 9e-23 Identities = 338/515 (66%), Gaps = 5/515 (1%) Strand=Plus/Minus Query 7472 ACGAGCGCGATTACGATTACCGTTATTTTGCCGTAAAAACTTTAAAAAACGGCTACTTGT 7531 |||| || || | | |||| |||||| | | ||||| ||| ||| ||| ||| Sbjct 150696 ACGACCGTGACTTTGGTTACAATTATTTCGGTTTCAAAACATTAGAAAGATCATACCTGT 150637 Query 7532 TGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGG 7591 ||||||| || || | | ||||| ||||||||||| |||| || || | | Sbjct 150636 TGAAAATTAAAGGGAAGATTGTAGAACGGCCACAACACATGCTCATGCGTGTTGCTATCG 150577 Query 7592 GCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAAC 7651 |||| || || | ||||||||| || || | || |||||| | || ||||| | | Sbjct 150576 GCATACATGGTGCAGACATTGATGCTGCAATTGAGACGTACAACTTGCTGTCTGAGCGAT 150517 Query 7652 AGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCAC-AAACGCGCCTCAATTGTCC 7710 | ||||||||||| ||||| ||||||||||| || | || |||| || ||| |||| Sbjct 150516 ACTTTACGCACGCCTCGCCAACCATGTTTGCTGCAGCAACTCAACG-ACCACAACTGTCG 150458 Query 7711 TCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGC 7770 || || || |||| || ||| || || |||||||| || |||||| | || || Sbjct 150457 TCCTGCTTCCTGCTGACAATGTCGGACGATAGCATCGAGGGAATTTACGATACTCTCAAA 150398 Query 7771 GATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGC 7830 | || || || || |||| | ||| || |||||||| || || | | | Sbjct 150397 CAGTGTGCATTGATCTCTAAATCGGCCGGTGGCATAGGTCTTAATGTGCATTGTATTAGA 150338 Query 7831 GCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTG 7890 || || || | || | || || || | | ||| ||| |||| || ||| || Sbjct 150337 GCTAAAGGAACATATATAGCAGGAACGAATGGTATATCCAACGGGTTAGTACCTATGCTG 150278 Query 7891 CGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAAAGGCGCC 7947 || || | ||| || | | ||| | || |||||||| || ||||| || || Sbjct 150277 CGTGTCTACAACAATACAGCGCGTTACGTGGACCAGGGTGGTAACAAGCGACCTGGGGCA 150218 Query 7948 GCTGCCATCTATTTGGAGCCGTGGCACGCGGACAT 7982 ||| || ||||||||||| ||||| | ||| || Sbjct 150217 TTTGCTATTTATTTGGAGCCATGGCATGGGGATAT 150183 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| ||| ||||| ||||| || ||||| || |||||||||||| Sbjct 21735261 CCACCACGGAGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 21735320 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| ||||| || || || | |||||||||||| ||||| Sbjct 21735321 AGGGTACGTCCGTCTTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGA 21735380 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || || | || || || | || || Sbjct 21735381 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 21735440 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| ||||| || | ||||| ||||| || ||||| Sbjct 21735441 TCAAGGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 21735487 Score = 113 bits (124), Expect = 5e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||||| || || || || || || ||||| || ||||||||||| || ||| | Sbjct 36315777 AGTCGCAGTACAAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGG 36315718 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||||||| || || || || || Sbjct 36315717 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCC 36315658 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | ||||| || | || || ||||| || Sbjct 36315657 TTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCCGATGGCTCGACCTCGAGTGTG 36315598 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || ||||| | ||||| |||||||| ||||||||| Sbjct 36315597 ATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATTTTG 36315556 >seq3 Length=33601328 Score = 140 bits (154), Expect = 3e-28 Identities = 229/330 (69%), Gaps = 9/330 (3%) Strand=Plus/Minus Query 21544 CGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGCCCAACAGATCG 21603 ||||||||||| || || ||||| || ||||| ||||||||||||||||||| |||| Sbjct 22123643 CGATCCGCCACAAACTCGATGTACTGGGACATGAGTTCGCAATTCATGCCCAACATATCG 22123584 Query 21604 ACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTCCTTGATCATGGCG 21663 || || || |||| ||| | ||||||| |||||| || ||||| ||| ||| | Sbjct 22123583 ACTGGCAGTGCTTTGGTCAGGAACTCCTGCTCGATTGCAACCGCATCCCGGATAA----- 22123529 Query 21664 TGTATTTCACCGGCGGACAATTTGTCTTGAGGCTCGATGTATTTGTTGTAGTAGAGACAA 21723 ||| |||| || | || ||| || || | ||| | |||||| Sbjct 22123528 TGTCCGTCACACGCTTGCGCGATGGCTT----CTGTATCAGATACTTGAACATGAGACAG 22123473 Query 21724 GCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGAGACCG 21783 ||||| | | ||||| || || |||||||| ||||| || ||| |||||| | ||| Sbjct 22123472 GCAAAGTCGCAATGCAAACCTTCATCGCGCGAGATCAACTCATTGGAGAACGTCAAACCC 22123413 Query 21784 GGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCAAAGCTACCGGaaaaaaaCACG 21843 ||||| | || || || || | | || || ||||||||||| ||| || || | | Sbjct 22123412 GGCATCAGGCCACGCTTCTTCAGCCAGAAGATGGCCGCAAAGCTGCCGCTGAAGAAGATG 22123353 Query 21844 CCCTCCACAATGGCGAACGCCACCATGCGC 21873 ||||| ||| ||||||||||| || ||| Sbjct 22123352 CCCTCGACAGCTGCGAACGCCACGATACGC 22123323 >seq2 Length=51801758 Score = 105 bits (116), Expect = 7e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| ||||| || ||||| || |||||||||||| | ||| || || || ||||| Sbjct 21000400 GTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGACCATCCTCCAGCTG 21000459 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || || || | |||||||||||| || || |||||||| || || ||||| || Sbjct 21000460 CTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATCTT 21000519 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 | || || || | || || || | || || || ||||| ||||| || || || Sbjct 21000520 TGCCTTCACGTTCTCAATCGTATCCGATGGCTCGACCTCCAGAGTGATGGTCTTTCCTGT 21000579 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTTG 134717 | || || |||||||| ||||| ||| Sbjct 21000580 CAGGGTCTTCACGAAAATCTGCATGTTG 21000607 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || ||||| || ||||| || ||| | ||| | ||| || ||||| Sbjct 36664895 GTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGACAGGGTACGTCCGTCCTCCAGCTG 36664836 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || ||||||||||||||||| || || ||||| || || || || || || Sbjct 36664835 CTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTT 36664776 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | || || || | ||||| || ||||| ||||| || || || Sbjct 36664775 GGCCTTCACGTTCTCGATGGTATCCGAAGGCTCCACCTCCAGAGTGATGGTCTTGCCAGT 36664716 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| Sbjct 36664715 CAAGGTCTTCACGAAGATCTGCAT 36664692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397130186520