Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 125 8e-24 seq3 86.0 7e-12 >seq1 Length=37976048 Score = 125 bits (138), Expect = 8e-24 Identities = 459/702 (65%), Gaps = 24/702 (3%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATG----AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGT 53297 |||||||||| |||| || ||| | ||||||||||||||| |||||||| ||| Sbjct 150545 TGAGACGTACAACTTGCTGTCTGAGCGA----TACTTTACGCACGCCTCGCCAACCATGT 150490 Query 53298 TCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATG 53357 | || | || | | || || ||||| |||||||||| || | ||| ||| | Sbjct 150489 TTGCTGCAGCAACTCAACGACCACAACTGTCGTCCTGCTTCCTGCTGACAATGTCGGACG 150430 Query 53358 ACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGG 53417 | ||||| || || ||||| || ||||| ||||||| ||||| || | | | | Sbjct 150429 ATAGCATCGAGGGAATTTACGATACTCTCAAACAGTGTGCATTGATCTCTAAATCGGCCG 150370 Query 53418 GTGGTATCGGTATCCAC-TGC-TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGAC 53475 |||| || ||| | | ||| | | | | | || || || ||| || || || Sbjct 150369 GTGGCATAGGTCTTAATGTGCATTGTA--TTAGAGCTAAAGGAACATATATAGCAGGAAC 150312 Query 53476 GAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535 ||| || | || | || | || |||||||| || |||| |||||| || || || || Sbjct 150311 GAATGGTATATCCAACGGGTTAGTACCTATGCTGCGTGTCTACAACAATACAGCGCGTTA 150252 Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595 ||| ||||||||||| ||||| ||| | || || || || | ||||| ||||| Sbjct 150251 CGTGGACCAGGGTGGTAACAAGCGACCTGGGGCATTTGCTATTTATTTGGAGCCATGGCA 150192 Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655 | || || | |||||| | || || ||| ||| | |||||| | ||| Sbjct 150191 TGGGGATATATTTGAGTTTTTGGACCTTAAAAAGAACACGGGAAAAGAAGAGGTCCGCGC 150132 Query 53656 CCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG- 53713 | ||| |||| ||| |||||||||||||| || | ||||||| | ||| |||| Sbjct 150131 TAGAGACATGTTCTAC-GCTCTGTGGATTCCTGATTTGTTCATGC--AGCGTGTCGAAGC 150075 Query 53714 -GACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGG 53772 |||| |||| | |||||||| |||| || || || | || | || Sbjct 150074 AAACGAAATGTGGAGTTTAATGTGCCCCCACGATTGTCCTGGTTTGTCGGAGACATGGGG 150015 Query 53773 TGAGGAGTTTAACGAGATGTA-TCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAG 53830 ||||||||| | | | || | | | |||| || | |||| || | || | || Sbjct 150014 TGAGGAGTTCCAAAAACTCTACACTGGC-TACG-AGCGCGAGGGTCGTTTCACGCGACAG 149957 Query 53831 GTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCG 53890 || ||||||| || | ||| || ||| | || ||||| ||||| ||| ||| Sbjct 149956 GTTAAGGCGCAAGATTTGTGGTTCGCCATCATAGAGTCGCAGGTTGAGACTGGAGTGCCT 149897 Query 53891 TACATGTGCTACAAGGATTCGGTCAA-CGAGAAGAGCAACCA 53931 |||||| |||||| ||| || ||| ||| ||||| ||||| Sbjct 149896 TACATGCTCTACAAAGATGCGTGCAATCGA-AAGAGTAACCA 149856 Score = 125 bits (138), Expect = 8e-24 Identities = 280/419 (67%), Gaps = 15/419 (4%) Strand=Plus/Plus Query 117977 AGCTGAGGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCC 118036 |||| ||||||| ||| || | ||| | || ||||||||||| ||||| |||||| Sbjct 21029494 AGCTCGGGCCAGTTGGTGTGAATGAAGTTGATCAGCAGCCCCTTGATGTGGGACCCGTCC 21029553 Query 118037 AGATCCGCATCGGTCATGATCATCAGGCGGCCGTACCGTAAATCTCTCAG-------GGA 118089 ||||| ||||||||||||||||| |||||||| || | ||| | Sbjct 21029554 TGATCCTGATCGGTCATGATCATCACCTTTCCGTACCGCAACGTTTTCAAATCCTCCGTC 21029613 Query 118090 GTTATAAACCTTACCATGT--TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCA 118147 || | || | | ||| ||||| || ||||| || | || ||| || |||| || Sbjct 21029614 GTGAGGTACTTCTTCTTGTACTGGAGACCCAGGATTTTGATCAGATTGTTAATTTCCGCA 21029673 Query 118148 TTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGA 118207 || ||| | ||| || ||| || || || ||||| || |||| || ||||| ||| Sbjct 21029674 TTCTCCAGAATCTGCTTGTGGGTCGCTTCACGCACGTTCAGCAGCTTGCCGCGCAGCGGA 21029733 Query 118208 AACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCC 118267 ||||| || || |||| || || || |||| || |||| | || | || || ||| Sbjct 21029734 AACACACCGTACGTGTCGCGCCCGACGACGCCCAGCCCGGACACGGCCAAGGTTTTGGCC 21029793 Query 118268 GAGTCACCCTCGGTAATAATAAGAGTGCACTCG---GTGCTGCGATGAGTACCGGCCCAA 118324 ||||| ||||| || | ||| || || || | | | | |||| | ||||| Sbjct 21029794 GAGTCTCCCTCCGTCAGAATGAGCGTACAGTTGAGCGAGTTGCGC---GACCCGGCATCG 21029850 Query 118325 TTAGCATCATCCAGCTTCGGAACGCCCGTAATGCGCGACTTTTTGGACCCATCTGTCTT 118383 || ||||| ||||||||||| | |||| | || ||| || || || ||| ||||| Sbjct 21029851 TTCGCATCCTCCAGCTTCGGGATGCCCTTGATTTTCGATTTCTTCGAGCCAGACGTCTT 21029909 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 119075 CTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCC 119134 ||||| | |||| |||||||||||||| ||||| || |||||||| || | |||| Sbjct 21030664 CTGAAAATGTTGCACAGCTTGGCACCGTACCCGTTTCGGCCACCGGTAACCTTCGCCTCC 21030723 Query 119135 TCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175 |||||||||||||||||| ||| | || || || ||||| Sbjct 21030724 TCGTCGTTGTAGTTGGAGGAGGTGAGCAGATGGCCGAAGAT 21030764 >seq3 Length=33601328 Score = 86.0 bits (94), Expect = 7e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| || |||| | |||||||| | ||||| ||||| || |||| | || Sbjct 22123473 GGCAAAGTCGCAATGCAAACCTTCATCGCGCGAGATCAACTCATTGGAGAACGTCAAACC 22123414 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 ||||| || ||||||||||||| ||| |||||||| ||| || ||||||||||| Sbjct 22123413 CGGCATCAGGCCACGCTTCTTCAGCCAGAAGATGGCCGCAAAGCTGCCGCTGAAGAAGAT 22123354 Query 74870 GCCTTCGACA 74879 ||| |||||| Sbjct 22123353 GCCCTCGACA 22123344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214625119800