Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 178 1e-39 seq2 163 3e-35 >seq1 Length=37976048 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || || ||||| ||||||||||| || || || ||||| ||| || Sbjct 36315559 AATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTCGAGGTCGAGCCATC 36315618 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| ||||||| || || ||||||||||||||||| || ||||| || Sbjct 36315619 GGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 36315678 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || ||||| || ||||||| |||||||| | ||||| || Sbjct 36315679 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTTTCGGACTACAA 36315738 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || ||||| || |||| ||||| ||||| Sbjct 36315739 CATCCAGAAGGAGTCGACCCTGCATCTTGTACTGCGACTTCGTGGTGG 36315786 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || || || || ||||| || || |||||||| ||| | Sbjct 21735487 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATCACCCTTGAGGTCGAGCCCTCG 21735428 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||||| || || |||||||||||||| ||||| || || ||| Sbjct 21735427 GATACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCAG 21735368 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || || || | |||||||| | ||||| || Sbjct 21735367 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAAGACGGACGTACCCTGTCCGACTACAAC 21735308 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| || || |||| || || ||||| Sbjct 21735307 ATCCAGAAGGAGTCGACGCTTCACCTGGTGCTGCGCCTCCGTGGTGG 21735261 Score = 127 bits (140), Expect = 2e-24 Identities = 238/350 (68%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 32053 AAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCG 32112 |||||||| |||||| | || | ||||| || | || || || || |||||| | Sbjct 21028955 AAGGTGGCCCAGCTGGCCGGTTCGGTGGCGGAAATGTCCGCTTACCATCATGGCGAGCAG 21028896 Query 32113 TCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAAC 32172 ||||| ||||||| |||| || || |||||||||||||| || ||| | || Sbjct 21028895 TCGCTGTGCAGCACCATCATCAATCTGGCCCAGAACTTTGTCGGCAGCAACAACATCAAT 21028836 Query 32173 TTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGC 32232 | || | || || |||||||| || ||| | | || |||||||| || ||| Sbjct 21028835 CTGCTGTACCCGGGCGGTCAGTTTGGTACGCGGTTGACGGGCGGCAAGGACAGCGCTAGC 21028776 Query 32233 TCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGAC 32292 | ||||||||||||||| || | | ||||||| || ||| | ||| ||| Sbjct 21028775 CCGCGTTACATCTTCACCATGCTTTCGTCACTGACGCGCCTCATCTTCCATCCGCTCGAC 21028716 Query 32293 GATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGT 32352 || || ||||| ||||| | | || ||| ||||| |||| ||| | | || Sbjct 21028715 GACCCGCTGCTCGAGTACCAGTACGAGGACAACCAGCGCATCGAACCGATCTGGTATCTG 21028656 Query 32353 CCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGG 32402 || | |||||||| | ||||||||||||| ||||| ||||||||||| Sbjct 21028655 CCCATCATTCCGATGTTGCTGGTGAACGGTGCCGAAGGTATCGGAACGGG 21028606 Score = 105 bits (116), Expect = 8e-18 Identities = 184/268 (69%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 31176 TGGGTCCAAAAAGTCTCGAATTACGGGAATTCCGAAGCTCGACGACGCCAACTGGGCCGG 31235 ||| || || || || ||| | ||| || |||||||| || || || ||| ||||| Sbjct 21029901 TGGCTCGAAGAAATCGAAAATCAAGGGCATCCCGAAGCTGGAGGATGCGAACGATGCCGG 21029842 Query 31236 TACCCACAAGTCGCACGAGTGCACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCT 31295 | | ||| |||| | | || ||||| ||| | || ||||| |||||||| || | | Sbjct 21029841 GTCGCGCAACTCGCTCAACTGTACGCTCATTCTGACGGAGGGAGACTCGGCCAAAACCTT 21029782 Query 31296 TGCTATTGCTGGCTTGAGTGTTGTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGG 31355 || | | || || | || || |||||| | ||| ||| ||||||||||| || || Sbjct 21029781 GGCCGTGTCCGGGCTGGGCGTCGTCGGGCGCGACACGTACGGTGTGTTTCCGCTGCGCGG 21029722 Query 31356 CAAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACAGGTTACGGATAATGAAGAGTTTTC 31415 ||||| || ||||| ||||| || || || ||| || ||| |||| || || Sbjct 21029721 CAAGCTGCTGAACGTGCGTGAAGCGACCCACAAGCAGATTCTGGAGAATGCGGAAATTAA 21029662 Query 31416 CAACCTGAAAAAGATCCTCGGGCTTCAG 31443 ||| |||| || ||||| || || ||| Sbjct 21029661 CAATCTGATCAAAATCCTGGGTCTCCAG 21029634 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60974 CCGGTTCCATAGTATAACGGTTAGTACACAGGACTCTGAATCCTGTAATGGGAGTTCGAT 61033 |||||||||| || |||||||||| || ||||||||||||||||| || |||||| | Sbjct 25044371 CCGGTTCCATGGTGTAACGGTTAGCACTCAGGACTCTGAATCCTGCGATCCGAGTTCAAA 25044430 Query 61034 TCTCCCTGGAACCTTCCTCT 61053 |||| |||||||| |||| Sbjct 25044431 TCTCGGTGGAACCTCGCTCT 25044450 >seq2 Length=51801758 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || || ||||| || ||||| ||||| ||| || Sbjct 21000603 ATGCAGATTTTCGTGAAGACCCTGACAGGAAAGACCATCACTCTGGAGGTCGAGCCATCG 21000544 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || ||||||| || |||||||||||||| || ||||| ||||| ||| Sbjct 21000543 GATACGATTGAGAACGTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 21000484 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || ||||||| ||| || || | ||||| || Sbjct 21000483 CAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGCACGCTGTCCGACTACAAC 21000424 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || || || || | ||| | ||||| || |||||| Sbjct 21000423 ATCCAGAAGGAGTCTACGCTGCACTTGGTCCTACGTCTGCGTGGTGGA 21000376 Score = 159 bits (176), Expect = 4e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || ||||| ||||| ||| | Sbjct 36664692 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCTTCG 36664751 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || ||||||| || || |||||||||||||| ||||||||||| ||| Sbjct 36664752 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAG 36664811 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || || || ||||| || ||||| | |||||||| | || ||||| Sbjct 36664812 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACCCTGTCCGATTATAAC 36664871 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || || || || | ||| | ||||| || |||||| Sbjct 36664872 ATCCAGAAGGAGTCGACCCTGCACTTGGTCCTCCGTCTGCGTGGTGGA 36664919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308967095120