Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3 172 5e-38 seq2 140 3e-28 seq1 125 6e-24 >seq3 Length=33601328 Score = 172 bits (190), Expect = 5e-38 Identities = 218/299 (73%), Gaps = 3/299 (1%) Strand=Plus/Minus Query 135465 ATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGAT 135524 |||||| |||||||| |||| || | ||| | | |||||||| |||||||||| Sbjct 31446257 ATGACC---TGTGGAACTCGGCCCAGCTACAGATGGTGAAGGAAGGCAAGATGCACGGAT 31446201 Query 135525 TTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGC 135584 || |||||||||| ||||| || || || | || ||| || |||||| | |||||||| Sbjct 31446200 TTCTGCGCATGTACTGGGCGAAGAAAATCCTCGAGTGGACTAAATCGCCGGAAGAGGCGC 31446141 Query 135585 TACAACACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCT 135644 | | ||| || | | || ||| |||||| || || || |||||| | || || | Sbjct 31446140 TCGAGACCGCTATCTACCTCAACGATCGCTACAGCTTGGACGGGCGCGATCCGAACGGGT 31446081 Query 135645 ACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAG 135704 |||| ||||| |||||||| || || | || ||||| || |||||||||||| || Sbjct 31446080 ACGTTGGTTGCATGTGGTCGATCGCTGGCATCCATGATCAGGGTTGGAAGGAGCGCGAAA 31446021 Query 135705 TGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAAT 135763 | || |||||||| ||||| |||||||| || || || | | |||| || |||| ||| Sbjct 31446020 TTTTCGGCAAGATCCGCTACATGAACTACGAAGGATGCAAACGAAAGTTCGATGTCAAT 31445962 >seq2 Length=51801758 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || ||||| || ||||| || || Sbjct 36664692 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCTTCG 36664751 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || || || || ||||| || ||||| || || ||||| Sbjct 36664752 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAG 36664811 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||||||||| || |||| ||| | ||| | |||||||| ||| Sbjct 36664812 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACCCTGTCCGATTATAAC 36664871 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || ||||| | ||| |||| ||||| || Sbjct 36664872 ATCCAGAAGGAGTCGACCCTGCACTTGGTCCTCCGTCTGCGTGGTGGAAT 36664921 >seq1 Length=37976048 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | || || ||||| || || || || Sbjct 21735487 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATCACCCTTGAGGTCGAGCCCTCG 21735428 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || || || || || ||||| || ||||| || || ||||| Sbjct 21735427 GATACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCAG 21735368 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||||||| | ||| | ||||| |||||| Sbjct 21735367 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAAGACGGACGTACCCTGTCCGACTACAAC 21735308 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| | || |||| |||| | || ||||| Sbjct 21735307 ATCCAGAAGGAGTCGACGCTTCACCTGGTGCTGCGCCTCCGTGGTGG 21735261 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || ||||||||| | || || || || || || || || Sbjct 36315560 ATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTCGAGGTCGAGCCATCG 36315619 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || ||||| || || || || || ||||| Sbjct 36315620 GACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 36315679 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || | ||| |||| || |||||| Sbjct 36315680 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTTTCGGACTACAAC 36315739 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||| | ||| | || |||| | || ||||| Sbjct 36315740 ATCCAGAAGGAGTCGACCCTGCATCTTGTACTGCGACTTCGTGGTGG 36315786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917307267520