Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq2 105 5e-18 >seq1 Length=37976048 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||||||||| || || ||||| || || || || || || Sbjct 21735487 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATCACCCTTGAGGTCGAGCCCTCG 21735428 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || || ||||| || || | ||||| ||||| Sbjct 21735427 GATACGATCGAGAATGTGAAGGC-CAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCA 21735369 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || |||||||||| ||| || | ||| ||||| Sbjct 21735368 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAAGACGGACGTACCCTGTCCGACTACAA 21735309 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 21735308 CATCCAGAAGGAGTCGAC 21735291 Score = 102 bits (112), Expect = 6e-17 Identities = 147/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| ||||| ||||| || || || ||||| ||||| || || | Sbjct 36315557 AAAATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTCGAGGTCGAGCCA 36315616 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| | || ||| | || | || || ||||| || || | || ||||| Sbjct 36315617 TCGGACACCATCGAGAATGTGAAGGC-GAAGATCCAGGACAAGGAGGGAATCCCCCCAGA 36315675 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGAT 23784 ||| |||||| | || || |||||||| || ||||| || | || | |||| | || Sbjct 36315676 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTTTCG--GAC 36315733 Query 23785 TACAACATACAAAAAGAGTCCAC 23807 |||||||| || || ||||| || Sbjct 36315734 TACAACATCCAGAAGGAGTCGAC 36315756 >seq2 Length=51801758 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| || ||||| || |||||||| || || || | Sbjct 21000606 AACATGCAGATTTTCGTGAAGACCCTGACAGGAAAGACCATCACTCTGGAGGTCGAGCCA 21000547 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || |||| | | || ||| ||| ||||| ||||| | || |||||| Sbjct 21000546 TCGGATACGATTGAGAACGTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCCCCAGAT 21000487 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || || || || || ||||| || | ||||| | ||| ||| Sbjct 21000486 CAGCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGCACGCTGTCCGACTAC 21000427 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||| || || ||||| || | || || || || | |||| || ||| Sbjct 21000426 AACATCCAGAAGGAGTCTACGCTGCACTTGGTCCTACGTCTGCGTGGTGGA 21000376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008771982108