Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2 140 3e-28 seq1 134 1e-26 >seq2 Length=51801758 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||||| |||| |||||||| ||||||||| ||||| |||||||| Sbjct 21000377 CCACCACGCAGACGTAGGACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGGAC 21000436 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || |||||||| || ||||| || || ||||| || || | |||| Sbjct 21000437 AGCGTGCGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGGGA 21000496 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| | ||||| | ||| || || || | ||| || Sbjct 21000497 ATGCCTTCCTTGTCC-TGAATCTTTGCCTTCACGTTCTCAATCGTATCCGATGGCTCGAC 21000555 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || || || || || ||||| ||||| ||||||||||||||||| Sbjct 21000556 CTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCATGTT 21000606 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||||| || ||||||||| |||||||| ||||| Sbjct 36664918 CCACCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGAC 36664859 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || ||||||||||||||||| |||| ||||| || || | ||| Sbjct 36664858 AGGGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 36664799 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||||| ||| || ||||| | | || || | ||||||| Sbjct 36664798 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCCGAAGGCTCCACC 36664739 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || |||| ||||| ||||| |||||||| Sbjct 36664738 TCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 36664692 >seq1 Length=37976048 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||| || ||||| ||||||||| ||||| |||||||| Sbjct 21735261 CCACCACGGAGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 21735320 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || ||||||||||||||||| || || ||||| || |||| ||| Sbjct 21735321 AGGGTACGTCCGTCTTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGA 21735380 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||||| ||| || ||||| | | || || | ||| ||| Sbjct 21735381 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 21735440 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || |||||||| || || || ||||| |||||||| Sbjct 21735441 TCAAGGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 21735487 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || |||||||| || ||||||||| ||||| ||||| || Sbjct 36315786 CCACCACGAAGTCGCAGTACAAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 36315727 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || ||||||||||||||||| ||||| ||||| || || | ||| Sbjct 36315726 AGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 36315667 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| || ||||| | | ||||| | ||| ||| Sbjct 36315666 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCCGATGGCTCGACC 36315607 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | || || || || || || ||||| || |||||||||||||| || Sbjct 36315606 TCGAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATTTT 36315557 Score = 86.0 bits (94), Expect = 6e-12 Identities = 179/267 (67%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 85787 GGGCTGCTACATTCGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGT 85846 ||| |||||| || | || ||||||||||| || || || || ||||||||| Sbjct 946480 GGGATGCTACGGCCGGGTGGCGCCTCGTTCCGGACTAGCGGTGAAAAACTTTATCGACGT 946421 Query 85847 GGGCGCCGGGGTCATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCA 85906 || || || ||| | |||| || ||||||||||||||| | || || || ||||| Sbjct 946420 CGGAGCTGGTGTCGTGGACGAAGATTACCGCGGAAACGTCGGAGTTGTGCTGTTTAACCA 946361 Query 85907 CGGCGAAGAGGATCTGGTCGTGAGGCGAGGAGACAAGGTGGCCCAGTTCATCTGTGAAAA 85966 ||||| | ||| | | || | | || || | || || |||||||| ||||| Sbjct 946360 TGGCGAGGCCGATTTCGAGGTCAAGAAGGGCGATCGTATTGCTCAATTCATCTGCGAAAA 946301 Query 85967 AATCCACTATTCCGACATACAAGAAGTGACAACTCTGGACACCACCCAACGAGGACAAGG 86026 ||| ||| |||| || ||||| || || | || | ||| |||| || || Sbjct 946300 AATAGCTTATCCCGAGCTAGAAGAATTGCCATCGCTTACCGATACCGAACGCGGCTCGGG 946241 Query 86027 AGGATTCGGGTCCACCGGAAACAATTA 86053 ||| || |||||||| || | ||||| Sbjct 946240 AGGGTTTGGGTCCACGGGCACTAATTA 946214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302838461200