Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01]
201 sequences; 173,339,239 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq2 140 3e-28
seq1 134 1e-26
>seq2
Length=51801758
Score = 140 bits (154), Expect = 3e-28
Identities = 171/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||||| |||| |||||||| ||||||||| ||||| ||||||||
Sbjct 21000377 CCACCACGCAGACGTAGGACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGGAC 21000436
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || || |||||||| || ||||| || || ||||| || || | ||||
Sbjct 21000437 AGCGTGCGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGGGA 21000496
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCAC 41814
| || ||||||||| ||| | ||||| | ||| || || || | ||| ||
Sbjct 21000497 ATGCCTTCCTTGTCC-TGAATCTTTGCCTTCACGTTCTCAATCGTATCCGATGGCTCGAC 21000555
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||||| || || || || || ||||| ||||| |||||||||||||||||
Sbjct 21000556 CTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCATGTT 21000606
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| ||||| || ||||||||| |||||||| |||||
Sbjct 36664918 CCACCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGAC 36664859
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| || ||||||||||||||||| |||| ||||| || || | |||
Sbjct 36664858 AGGGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 36664799
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| || |||||||||| ||| || ||||| | | || || | |||||||
Sbjct 36664798 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCCGAAGGCTCCACC 36664739
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || || || |||| ||||| ||||| ||||||||
Sbjct 36664738 TCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 36664692
>seq1
Length=37976048
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | |||||| || ||||| ||||||||| ||||| ||||||||
Sbjct 21735261 CCACCACGGAGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 21735320
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| || ||||||||||||||||| || || ||||| || |||| |||
Sbjct 21735321 AGGGTACGTCCGTCTTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGA 21735380
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| || |||||||||| ||| || ||||| | | || || | ||| |||
Sbjct 21735381 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 21735440
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| | || || || |||||||| || || || ||||| ||||||||
Sbjct 21735441 TCAAGGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 21735487
Score = 122 bits (134), Expect = 8e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || |||||||| || ||||||||| ||||| ||||| ||
Sbjct 36315786 CCACCACGAAGTCGCAGTACAAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 36315727
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || || ||||||||||||||||| ||||| ||||| || || | |||
Sbjct 36315726 AGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 36315667
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| | |||||||||| ||| || ||||| | | ||||| | ||| |||
Sbjct 36315666 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCCGATGGCTCGACC 36315607
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| | || || || || || || ||||| || |||||||||||||| ||
Sbjct 36315606 TCGAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATTTT 36315557
Score = 86.0 bits (94), Expect = 6e-12
Identities = 179/267 (67%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 85787 GGGCTGCTACATTCGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGT 85846
||| |||||| || | || ||||||||||| || || || || |||||||||
Sbjct 946480 GGGATGCTACGGCCGGGTGGCGCCTCGTTCCGGACTAGCGGTGAAAAACTTTATCGACGT 946421
Query 85847 GGGCGCCGGGGTCATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCA 85906
|| || || ||| | |||| || ||||||||||||||| | || || || |||||
Sbjct 946420 CGGAGCTGGTGTCGTGGACGAAGATTACCGCGGAAACGTCGGAGTTGTGCTGTTTAACCA 946361
Query 85907 CGGCGAAGAGGATCTGGTCGTGAGGCGAGGAGACAAGGTGGCCCAGTTCATCTGTGAAAA 85966
||||| | ||| | | || | | || || | || || |||||||| |||||
Sbjct 946360 TGGCGAGGCCGATTTCGAGGTCAAGAAGGGCGATCGTATTGCTCAATTCATCTGCGAAAA 946301
Query 85967 AATCCACTATTCCGACATACAAGAAGTGACAACTCTGGACACCACCCAACGAGGACAAGG 86026
||| ||| |||| || ||||| || || | || | ||| |||| || ||
Sbjct 946300 AATAGCTTATCCCGAGCTAGAAGAATTGCCATCGCTTACCGATACCGAACGCGGCTCGGG 946241
Query 86027 AGGATTCGGGTCCACCGGAAACAATTA 86053
||| || |||||||| || | |||||
Sbjct 946240 AGGGTTTGGGTCCACGGGCACTAATTA 946214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462302838461200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |