Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq328 111 2e-19 >seq328 Length=4755327 Score = 111 bits (122), Expect = 2e-19 Identities = 170/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || ||||| ||||| || || |||||| ||| ||| | || ||||| || ||||| Sbjct 1649077 ATGTACGTGTCGATCAGCAGCGAGTACATCTCGCTGTGCACATTTTCCATCGCAATCTGG 1649018 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || ||||| ||||| || || |||| | || || ||| | ||| |||||| | ||| Sbjct 1649017 AAGCCGTAGAAGCAGCGCGCCTCCGTAACCTGCACCTCCTGGCTGAAGCGTTCCACCAGA 1648958 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 || ||||||||||| |||||| |||||| || || |||| | || |||||| | Sbjct 1648957 TTCTCGTTCACGATACCGTCGGACGCGGCAAAGAAGGCCAGCACGTGGGAAATGAAGTGG 1648898 Query 17414 TTTTCGTCCGGTGTAAG-AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTC 17472 |||| |||| | || || | ||||||||| | || ||||| | ||| || ||||| Sbjct 1648897 CGTTCGCTCGGTTTCAGCGACTC-CCAGTCCTTCATGTCCTTGGACAGATCAACCTCTTC 1648839 Score = 93.3 bits (102), Expect = 4e-14 Identities = 271/411 (66%), Gaps = 6/411 (1%) Strand=Plus/Minus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857 ||| || ||||| || || || || |||| | || |||||||| || | | | || Sbjct 1649618 ATCGGCCACAAACTCAATGTACTGCGACATCAGATCACAGTTCATGCCCAGCATATCCAC 1649559 Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917 ||| || || | ||||| || ||||| || | ||||| || || || | Sbjct 1649558 CGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCAGGACCGCATCGCGGATGATCTCCGT 1649499 Query 16918 AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCA 16977 || || |||| ||||| | || |||| || |||||||| || || || ||||| Sbjct 1649498 CACGCGCTCCTTCGACGGCTTCTGCACCAGATACTTGAACATCAGGCAGGCAAAGTCGCA 1649439 Query 16978 ATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCC 17037 || | || ||||| | ||| || ||||| || || || | || |||||| || Sbjct 1649438 GTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTCCCGGCATCAGGCC 1649379 Query 17038 TCGTTTCTTTAACCAAAATATCGCGGCGAA-CGACC-CAGAAAAGAATATACCCTCGACG 17095 || ||||| | ||| || ||||||||||| | ||| | | ||||| |||||||| || Sbjct 1649378 ACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTACCGCTG--AAGAAGATACCCTCAACC 1649321 Query 17096 GATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA-ATCCATTTCTG 17154 | || || || | | || ||| | | | || | ||| | ||| ||||| ||| | Sbjct 1649320 GCAGCGAAAGCCACGACCCGCTCGCCAAAGTTGGCCTTCTTGCT-CGAGATCCAGTTCAG 1649262 Query 17155 CACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA 17205 | |||| || || || |||| | ||| || |||||| ||||| || || Sbjct 1649261 CGCCCAATCCGCCTTCCGCTTCACGCACGGCAGCGTTTCGATGGCATTGAA 1649211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517537746245520