Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq272 102 8e-17 seq328 86.0 6e-12 >seq272 Length=5604218 Score = 102 bits (112), Expect = 8e-17 Identities = 184/262 (70%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTG-TCGTGGAGTCC 118994 |||||||| || || || ||||| | ||||||||||| || ||| ||||||| || Sbjct 4888856 TTCATGTACCGAATTTTGCCAAAGATTTCGCGCTCCTTCCA-GCCCTGATCGTGGATGCC 4888914 Query 118995 TGCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACT 119053 || | | ||| | || || ||||| ||||| ||||| || || | ||| ||| Sbjct 4888915 CGCGATCGACCACATGCAACCGACGTACCCGTTCGGATCGCGCCCATCCAGACT-GTAGC 4888973 Query 119054 TATCGTTTAAGTAGATACAGACGCTTAACGCACTT--TCCGGAGTCTTACTCCATTCCAG 119111 |||||| | ||||| | || | | || ||| || || || || |||| ||||| Sbjct 4888974 GATCGTTCAGATAGATC--GCCGTCTCAAGCGCTTCCTCGGGCGTTTTCGTCCACTCCAG 4889031 Query 119112 TAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTG 119171 || ||||| ||||||||||| || | | |||||||| || ||||| || | |||||| Sbjct 4889032 AATCTTTTTGGCCCAGTACATGCGCAGGAAGCCGTGCATCTTGCCCTCCTTCACCATCTG 4889091 Query 119172 AAGTTGTGCGGTGTTCCATAGA 119193 || || || | |||||| ||| Sbjct 4889092 CAGCTGGGCCGAGTTCCACAGA 4889113 >seq328 Length=4755327 Score = 86.0 bits (94), Expect = 6e-12 Identities = 178/265 (67%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || ||||| || ||||| | |||||| || ||| | || || || || ||||| Sbjct 1649077 ATGTACGTGTCGATCAGCAGCGAGTACATCTCGCTGTGCACATTTTCCATCGCAATCTGG 1649018 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 || || |||||||| || ||||||| | || || ||| | || |||||| |||| Sbjct 1649017 AAGCCGTAGAAGCAGCGCGCCTCCGTAACCTGCACCTCCTGGCTGAAGCGTTCCACCAGA 1648958 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATAT 16651 ||||| |||||||||||||| || ||||| || |||| | ||| |||||| | Sbjct 1648957 TTCTCGTTCACGATACCGTCGGACGCGGCAAAGAAGGCCAGCACGTGGGAAATGAAGTGG 1648898 Query 16652 TTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCT 16711 |||| | | | || | ||| || || | || ||||| | ||| || ||||| Sbjct 1648897 CGTTCGCTCGGTTTCAGCGACTCCCAGTCCTTCATGTCCTTGGACAGATCAACCTCTTCC 1648838 Query 16712 GGCGTCCAAAAGCTAGCCACTGCCT 16736 |||||| ||| ||| | |||| Sbjct 1648837 ACCGTCCAGAAGGAAGCTTCCGCCT 1648813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511406639286480