Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq328 293 2e-74 seq250 136 4e-27 seq1104 105 7e-18 seq327 98.7 1e-15 >seq328 Length=4755327 Score = 293 bits (324), Expect = 2e-74 Identities = 326/435 (75%), Gaps = 0/435 (0%) Strand=Plus/Plus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| || |||||||| ||| |||||||||| || |||||| || ||||||||| || Sbjct 1649209 TGTTCAATGCCATCGAAACGCTGCCGTGCGTGAAGCGGAAGGCGGATTGGGCGCTGAACT 1649268 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 ||||| | ||| ||||| ||| |||||||| | ||||| ||||| || || |||| Sbjct 1649269 GGATCTCGAGCAAGAAGGCCAACTTTGGCGAGCGGGTCGTGGCTTTCGCTGCGGTTGAGG 1649328 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 | ||||||| || || |||||||| || || ||||| ||||| || ||||| |||| Sbjct 1649329 GTATCTTCTTCAGCGGTAGCTTCGCCGCGATCTTCTGGCTGAAGAAGCGTGGCCTGATGC 1649388 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 | || || || ||| |||||||| ||||| | ||||| || ||||| |||||||||| Sbjct 1649389 CGGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGACGAAGGGCTGCACTGCGACTTTG 1649448 Query 117186 CCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCG 117245 |||| || |||||||| || |||||||| ||| || |||||| | ||||||| Sbjct 1649449 CCTGCCTGATGTTCAAGTATCTGGTGCAGAAGCCGTCGAAGGAGCGCGTGACGGAGATCA 1649508 Query 117246 TCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGC 117305 || ||| |||||| ||||||||| ||||| || | || ||||||||| | ||| Sbjct 1649509 TCCGCGATGCGGTCCTGATCGAGCAGGAGTTCCTGACGAAGGCACTGCCGGTGGATATGC 1649568 Query 117306 TGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGC 117365 |||| | || || || ||||||||| ||||| ||||| || ||||| | |||||| Sbjct 1649569 TGGGCATGAACTGTGATCTGATGTCGCAGTACATTGAGTTTGTGGCCGATCGCTTGCTGC 1649628 Query 117366 TCGAGCTGGTCGGCG 117380 ||||||||| | ||| Sbjct 1649629 TCGAGCTGGGCTGCG 1649643 Score = 219 bits (242), Expect = 4e-52 Identities = 220/283 (78%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || || |||||||| || || ||||| || ||||||||||||| || |||| Sbjct 1648813 AGGCGGAAGCTTCCTTCTGGACGGTGGAAGAGGTTGATCTGTCCAAGGACATGAAGGACT 1648872 Query 116715 GGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 ||||| ||| |||| | ||| ||||| ||||| |||||||||||||| || ||| Sbjct 1648873 GGGAGTCGC-TGAAACCGAGCGAACGCCACTTCATTTCCCACGTGCTGGCCTTCTTTGCC 1648931 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 || |||||| ||||| |||||||||||||| || || ||| |||||||||||||| Sbjct 1648932 GCGTCCGACGGTATCGTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGTT 1648991 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 | |||||||| |||||||||||||| ||||| || ||||| || |||||| || ||| Sbjct 1648992 ACGGAGGCGCGCTGCTTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGCGAGATG 1649051 Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGA 116936 || ||| || |||||||||||| | ||| ||| | |||| Sbjct 1649052 TACTCGCTGCTGATCGACACGTACATCCGCGACTCGAAAGAGA 1649094 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || ||||||||| | || |||||||| ||||| ||||| |||||||| || || || ||| Sbjct 1648646 GAACCGCTGCTGAGAGACAACCCCCGGCGGTTTGTGATCTTCCCCATCCAGTATCCCGAC 1648705 Query 116636 ATGTGGCGCATGTACAAAAAGG 116657 || |||| ||||||||||||| Sbjct 1648706 ATTTGGCAAATGTACAAAAAGG 1648727 >seq250 Length=5469655 Score = 136 bits (150), Expect = 4e-27 Identities = 162/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| || ||||| ||||| ||||| ||||| |||||||| | || ||||| Sbjct 4641025 GAAACATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGC 4640966 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | | |||| | | | | |||| ||| || | ||||| || ||||| ||| | | Sbjct 4640965 CTTCGGACACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAG 4640906 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| || || |||| ||| ||||| |||||||| || | ||||| ||| ||||| Sbjct 4640905 ATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACT 4640846 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||| |||||||| | || || ||||| ||| |||| Sbjct 4640845 ACAACATTCAGAAGGAATCGACCCTTCATCTGGTGCTGCG 4640806 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| || ||||| ||| | || ||||| || Sbjct 3557418 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 3557477 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | |||| || || | ||||| ||||| ||||| | || Sbjct 3557478 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGAT 3557537 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| || | ||||| || ||| ||| Sbjct 3557538 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTAC 3557597 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| | || || ||||| ||| ||||| || | || || Sbjct 3557598 AACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGCCTGCGCGGTGG 3557647 >seq1104 Length=7559990 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || || || ||||||||| | || || || | || Sbjct 5393897 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCC 5393838 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || || | | |||| ||| || | ||||| ||||| ||||| | || || Sbjct 5393837 GATACGATTGAGAATG-TGAAGGCAAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCA 5393779 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || |||||||| || | |||||||| ||||| || Sbjct 5393778 GCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAA 5393719 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || ||||| || Sbjct 5393718 CATCCAGAAGGAATCGACTCTTCATCTGGT 5393689 Score = 104 bits (114), Expect = 2e-17 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || || || |||||||| | || || || |||| | Sbjct 5394125 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACTCTGGAGGTTGA-GCCATC 5394067 Query 40750 G---AC-AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | || | || | | |||| || || | ||||| ||||| ||||| | || Sbjct 5394066 GGATACGATCGAG--AATG-TGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGA 5394010 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || || |||| ||| || || |||||||| || | |||||||| ||||| Sbjct 5394009 TCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTA 5393950 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||| |||| || ||||| || Sbjct 5393949 TAACATCCAGAAGGAATCCACCCTTCATCTGGT 5393917 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| ||||| || || || || |||||||| | || || || || Sbjct 5394357 AAATATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACTCTGGAAGTTGA-GC 5394299 Query 40746 CACCG-ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || || | | | | | | |||| || || | ||||| ||||| ||||| | | Sbjct 5394298 CATCGGATACTATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAG 5394239 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| || || |||| ||| || || |||||||| || | |||||||| |||| Sbjct 5394238 ATCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACT 5394179 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 | |||||||||||||| | || || ||||| || Sbjct 5394178 ATAACATCCAGAAGGAATCGACTCTTCATCTGGT 5394145 >seq327 Length=13998812 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| |||||||| | || ||||| | | Sbjct 3500930 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 3500989 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | || || ||||| || || | || || Sbjct 3500990 GACACGATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAGGGTATTCCTCCAGATCA 3501048 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || |||||||| |||| || ||| | ||||||||| Sbjct 3501049 GCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAGGACGGACGTACCTTGTCCGACTACAA 3501108 Query 40869 CATCCAGAAGGAG 40881 ||||||||||||| Sbjct 3501109 CATCCAGAAGGAG 3501121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515211381548640