Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq472 203 3e-47 seq250 136 3e-27 seq1104 104 2e-17 seq327 104 2e-17 >seq472 Length=2253382 Score = 203 bits (224), Expect = 3e-47 Identities = 535/807 (66%), Gaps = 40/807 (5%) Strand=Plus/Plus Query 133215 AGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGAC 133274 |||| ||||| ||||| || |||||||| | || ||||| || || || |||||| Sbjct 817987 AGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGAC 818046 Query 133275 GTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATG 133334 ||| |||| ||||| ||||| ||||||||||| || || ||||| | ||||| ||||| Sbjct 818047 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATC 818106 Query 133335 TACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTC 133394 |||| || || || || | | ||||| |||| || || || ||| ||| | Sbjct 818107 GGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCC 818166 Query 133395 CAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGC 133454 |||| |||||||| || || | || | || | | | | ||| Sbjct 818167 CAGTTCCACAGAT--------------CCGTCGGT-TCCTTGTTCCACATCTCGTACTGC 818211 Query 133455 AAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCC 133514 || || ||| |||||||||||||| || ||||| || || ||||| | |||| Sbjct 818212 AAGATGCCCTTGCTCACCGGACTGCCCTCGTACGTCTCGTACGGTCCATCTCGAGCGGCC 818271 Query 133515 AGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGACG 133574 | ||| ||||| || |||| ||| | |||| ||||||| ||| | | | ||||| Sbjct 818272 AACTCACAGCTCGCTTCCAGCGCGCCGTAGTAGATGGTTT---CGAAT-ATTTGTTGATT 818327 Query 133575 AACCT----GGCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCA 133629 | || || || ||||| ||||| | ||| || | || | ||||| ||||||| Sbjct 818328 TAGCTTTTGAGCCTCTTCGCTTTCGTACG-GATAGCGCATCAGGATGAACGCATCGGCCA 818386 Query 133630 AACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCG 133689 ||||| | ||||| ||||| || | || ||||| | || | ||| | | Sbjct 818387 TGCCCTGCACGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCA 818446 Query 133690 TGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATA--ATTTTAGTCAA 133747 |||||||| ||||| || ||||| ||||| |||||||| || || | |||| | Sbjct 818447 CGGGATAGTAATTGACATCAATGATTTTGTTCAGATTGCG--CGTTACGGTCTTAGCGAC 818504 Query 133748 ATGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGC 133807 | |||||| || ||||| | || || ||| | || || |||| | ||| Sbjct 818505 TTCCTTCAGCTTTGCAAAGTCATACGTTTT---GTCTTGCTTTACAAACATGTTCAAGGC 818561 Query 133808 AATACTGGCTAGATTACAAACGGCCGTCTCGTTC-TCGTCGCAATACTGGACGATCTCGG 133866 || ||| ||||| || || || ||| | | ||| || | |||| || ||||| | Sbjct 818562 GATCGAGGCCAGATTGCATACCGCTACCTCATCCTTCGACG-AGTACTCCACAATCTCAG 818620 Query 133867 CGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAAT 133926 ||| | |||| |||||||||||||| | ||| | || || || ||||||| Sbjct 818621 TGCACAAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAG 818680 Query 133927 GATCCTTGTATAGCATGTACGGCCCGCCGGTTTCGACGTTGGTCTCGACGAT---AAATC 133983 ||||||||| ||||||||||| |||||||||| || | | |||| ||| ||| | Sbjct 818681 CATCCTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACC 818740 Query 133984 TAAACAAGTCTCTCGCCTTCACCTGCC 134010 ||| || |||||||||||||| Sbjct 818741 ---ACAGATCCTGCGCCTTCACCTGCC 818764 >seq250 Length=5469655 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || || ||||| || | || || || || ||||||||||| ||| Sbjct 4640792 TACCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGG 4640851 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||||| |||||| ||||| || || ||| |||| |||||||||||||| || | Sbjct 4640852 AGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 4640911 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| |||||||| || ||| || || | |||| ||||||| ||||| Sbjct 4640912 GAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGA 4640971 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| | || | || |||||||| || ||||| || |||||||||||| Sbjct 4640972 CCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 4641021 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | || ||||| || | || ||||| || || |||||||||||| Sbjct 3557648 ACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGA 3557589 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||||| |||||| ||||| || || ||| |||| |||||||||||||| || || Sbjct 3557588 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 3557529 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||||||||| || || || || | |||| || |||| | |||||| Sbjct 3557528 GATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 3557469 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | ||| | || || || || || ||||| || || |||||||| Sbjct 3557468 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 3557421 >seq1104 Length=7559990 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || ||||| || || || ||||| ||| || ||||| ||||| Sbjct 5393929 GTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 5393988 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| |||||||||||||| || || || ||||||||||| || || || Sbjct 5393989 GCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTC 5394048 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| || |||| ||| ||||| | || | || || |||||||||||| Sbjct 5394049 ACATTCTCGATCGTATCCGATGGCTCAACCTCCAGAGTGATGGTCTTTCCGGTCAGAGTT 5394108 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 5394109 TTCACGAAAATCTGCAT 5394125 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || ||||| || || || ||||| |||||| ||||| |||||| Sbjct 5394157 GTCGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCA 5394216 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| |||||||||||||| || || || ||||||||||| || || || Sbjct 5394217 GCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTC 5394276 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | || |||| ||| || || | || | || || |||||||||||| Sbjct 5394277 ACATTCTCAATAGTATCCGATGGCTCAACTTCCAGAGTGATGGTCTTTCCGGTCAGAGTT 5394336 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 5394337 TTCACGAAAATCTGCAT 5394353 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || ||||| || || || ||||| |||||| ||||| ||||| Sbjct 5393701 GTCGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCG 5393760 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| |||||||||||||| || || || ||||||||||| || ||| || Sbjct 5393761 GCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTC 5393820 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | || || | ||| || || | ||| | || || |||||||||||| Sbjct 5393821 ACATTCTCAATCGTATCGGAAGGCTCAACTTCCAGGGTGATGGTCTTTCCGGTCAGAGTT 5393880 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 5393881 TTCACGAAAATCTGCAT 5393897 >seq327 Length=13998812 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | | ||||| || || |||||||| ||| || || || ||||| Sbjct 3501138 ACCAAGTGAAGGGGTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCCTCC 3501079 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| |||| | |||||||||||| ||||| || |||||||| || Sbjct 3501078 AGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTATCCTGG 3501019 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||||| ||||||||| | || | || ||| Sbjct 3501018 ATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 3500959 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || ||||| || || || || ||||||||| Sbjct 3500958 CCAGTCAGCGTCTTCACGAAGATCTGCATG 3500929 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| || ||| || || || Sbjct 3500910 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCTTCC 3500851 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||||| || || ||| |||| | |||||||||||| ||||| || |||||||| Sbjct 3500850 AGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTT 3500798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433823981208088