Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq316 109 6e-19 seq527 104 3e-17 seq1104 102 9e-17 seq438 100 3e-16 seq549 96.9 4e-15 seq771 95.1 1e-14 seq327 95.1 1e-14 >seq316 Length=4724671 Score = 109 bits (120), Expect = 6e-19 Identities = 89/107 (83%), Gaps = 6/107 (6%) Strand=Plus/Plus Query 60037 ACAACAAATTA-ACGTTTATGAAA-----AATTTTCTCCTCGGCAGGGAATCGAACCCTG 60090 |||||||||| | ||||| ||| |||||||||| || | ||||||||||||| | Sbjct 4346766 ACAACAAATTCTATATTTATAAAATAAACAATTTTCTCCCCGACGGGGAATCGAACCCCG 4346825 Query 60091 GTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||| ||||| |||||||||||| |||||| Sbjct 4346826 GTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTATCGAGGA 4346872 Score = 105 bits (116), Expect = 8e-18 Identities = 81/94 (86%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 |||| |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 4348563 AAATATTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTG 4348622 Query 60119 ACCACTATACTACCGAGGAT-TGAAT--ATATAA 60149 |||||||||||| ||||||| | ||| |||||| Sbjct 4348623 ACCACTATACTATCGAGGATGTTAATCAATATAA 4348656 Score = 102 bits (112), Expect = 9e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 60053 TATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 ||||||| | | |||| || | ||||||||||||| ||||||||||||||||||||| Sbjct 4335683 TATGAAATTTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 4335742 Query 60113 ATACTCACCACTATACTACCGAGGAT 60138 ||||| |||||||||||| ||||||| Sbjct 4335743 ATACTGACCACTATACTATCGAGGAT 4335768 >seq527 Length=1652681 Score = 104 bits (114), Expect = 3e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1515719 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 1515778 Query 60125 ATACTACCGAGGA--TTGAATATATAACTTGAATATTACA 60162 |||||| |||||| |||| ||| ||| || ||| ||||| Sbjct 1515779 ATACTATCGAGGAAGTTGATTAT-TAATTTAAAT-TTACA 1515816 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 1517320 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 1517379 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 1517380 TATACTATCGAGGA 1517393 Score = 98.7 bits (108), Expect = 1e-15 Identities = 73/84 (87%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 ||||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 1518217 AAATTCCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTG 1518276 Query 60119 ACCACTATACTACCGAGG-ATTGA 60141 |||||||||||| ||||| ||||| Sbjct 1518277 ACCACTATACTATCGAGGAATTGA 1518300 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/94 (84%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 60052 TTATGAAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 |||| |||| | || ||| || | ||||||||||||| ||||||||||||||||||||| Sbjct 1514615 TTATAAAAATCTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 1514674 Query 60111 ACATACTCACCACTATACTACCGAGGA--TTGAA 60142 ||||| |||||||||||| |||||| ||||| Sbjct 1514675 GGATACTGACCACTATACTATCGAGGACGTTGAA 1514708 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 1513725 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 1513784 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 1513785 CTATACTATCGAGGA 1513799 >seq1104 Length=7559990 Score = 102 bits (112), Expect = 9e-17 Identities = 74/85 (87%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTC---GGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||||| ||||||||| | | ||||||||||||| ||||||||||||||||||||| | Sbjct 6295467 AAAAAATTTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 6295526 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 |||| |||||||||||| ||||||| Sbjct 6295527 TACTGACCACTATACTATCGAGGAT 6295551 Score = 100 bits (110), Expect = 3e-16 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 60057 AAAAAT-TTTCTCCTC---GGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 |||||| ||||||||| | | ||||||||||||| ||||||||||||||||||||| Sbjct 6295777 AAAAATATTTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 6295718 Query 60113 ATACTCACCACTATACTACCGAGGAT 60138 ||||| |||||||||||| ||||||| Sbjct 6295717 ATACTGACCACTATACTATCGAGGAT 6295692 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4335423 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 4335364 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 4335363 ATACTATCGAGGA 4335351 Score = 96.9 bits (106), Expect = 4e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 6296215 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 6296156 Query 60126 TACTACCGAGGA-TTGAA 60142 ||||| |||||| ||||| Sbjct 6296155 TACTATCGAGGACTTGAA 6296138 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 7149299 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 7149358 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 7149359 TACTATCGAGGA 7149370 >seq438 Length=11078434 Score = 100 bits (110), Expect = 3e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||| |||||| ||| || | ||||||||||||| ||||||||||||||||||||| ||| Sbjct 4956334 AAAGATTTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 4956275 Query 60116 CTCACCACTATACTACCGAGGA 60137 || |||||||||||| |||||| Sbjct 4956274 CTGACCACTATACTATCGAGGA 4956253 Score = 100 bits (110), Expect = 3e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 60057 AAAAATTT-TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||| |||| ||||| || | ||||||||||||| ||||||||||||||||||||| ||| Sbjct 5132077 AAAGATTTCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 5132136 Query 60116 CTCACCACTATACTACCGAGGA 60137 || |||||||||||| |||||| Sbjct 5132137 CTGACCACTATACTATCGAGGA 5132158 >seq549 Length=10034839 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 8740944 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 8740885 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 8740884 ATACTATCGAGGA 8740872 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 5929525 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 5929584 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 5929585 TACTATCGAGGA 5929596 >seq771 Length=9217108 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 4941425 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 4941484 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 4941485 TACTATCGAGGA 4941496 >seq327 Length=13998812 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || ||||||||||| ||||| Sbjct 3501121 CTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCCTCCAGCTGCTTACCGGCGAA 3501062 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | |||||||| || | || | | |||||| ||| ||| || || | | Sbjct 3501061 GATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTATCCTGGATCTTGGCCTTCACGTT 3501002 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||| || || || || | ||||||||| ||||| || |||||||| || Sbjct 3501001 CTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 3500942 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 3500941 GAAGATCTGCAT 3500930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571808922667920