Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq250 127 1e-24 seq1104 122 6e-23 seq327 102 5e-17 >seq250 Length=5469655 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||||| || | || || ||||| |||||||| |||||| Sbjct 3557647 CCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 3557588 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| ||| | || |||| ||||||||| ||||| || || |||||||| || | |||| Sbjct 3557587 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 3557528 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | || | |||| ||| | | ||||| Sbjct 3557527 -ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 3557469 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || ||||| || || ||||| ||||| || |||||||||||| Sbjct 3557468 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATC 3557420 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||||||||| || | || ||| ||||| |||||||||||||| Sbjct 4640794 CCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAG 4640853 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| ||||| || || |||||||| || ||| Sbjct 4640854 AGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 4640913 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| |||||| ||| | || | |||| || | | ||||| Sbjct 4640914 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACC 4640973 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||||||||| |||||||| || |||||||| Sbjct 4640974 TCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 4641020 >seq1104 Length=7559990 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | || ||||| || | ||| ||| ||||| ||||| ||||| || Sbjct 5393670 TCCACCACGCAGACGGAGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGA 5393729 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 ||| ||| | || |||| |||||| || || || || || |||||||| || | ||| Sbjct 5393730 CAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGCGG 5393789 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | | ||||||||| |||||| ||| | || | |||| ||||| | || | Sbjct 5393790 G-ATTCCCTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATCGTATCGGAAGGCTCAA 5393848 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| |||||||| || ||||| ||||||||||| || |||||||| Sbjct 5393849 CTTCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5393897 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || ||||| || | || ||| ||||| ||||| ||||| ||| Sbjct 5393899 CCACCACGCAGACGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCCGAC 5393958 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || |||| |||||| || ||||| || || |||||||| || | |||| Sbjct 5393959 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 5394018 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | || | |||| ||| | | || || Sbjct 5394019 -ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCAAC 5394077 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || ||||| ||||||||||| || |||||||| Sbjct 5394078 CTCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5394125 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || ||||| || | ||| ||| ||||| ||||| ||||| ||| Sbjct 5394127 CCACCACGCAGACGGAGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGAC 5394186 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || |||| |||||| || ||||| || || |||||||| || | |||| Sbjct 5394187 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGG 5394246 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | || | || | ||| | | || || Sbjct 5394247 -ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATAGTATCCGATGGCTCAAC 5394305 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || ||||| ||||||||||| || |||||||| Sbjct 5394306 TTCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5394353 >seq327 Length=13998812 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||||| ||| |||| |||| |||||| || ||||| Sbjct 3501120 TCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCCTCCAGCTGCTTACCGGCGAAG 3501061 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | |||||||| || || | | |||||| || ||||| ||| | | Sbjct 3501060 ATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTATCCTGGATCTTGGCCTTCACGTTC 3501001 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| || | || ||||| |||| ||||||||| ||||| || || || ||||| Sbjct 3501000 TCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACG 3500941 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 3500940 AAGATCTGCAT 3500930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323067219947840