Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2 125 2e-23 >seq2 Length=6617244 Score = 125 bits (138), Expect = 2e-23 Identities = 265/394 (67%), Gaps = 16/394 (4%) Strand=Plus/Plus Query 253997 CGACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCT 254056 ||| || || || |||| | |||| || ||||| || || || || || ||||| Sbjct 589872 CGATCTGCCGAATCTGCTGCTGTACGGACCACCCGGCACCGGTAAAACCAGCACAATCCT 589931 Query 254057 GGCGCTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAA 254116 || ||| || ||||| ||||| | || | |||||| | ||||||||||| Sbjct 589932 TGCAGCGGCGAGACAGCTGTTCGGCGACATGTTCAAG---GAGCGCATTCTCGAGCTGAA 589988 Query 254117 CGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGAT 254176 || || ||||| || || | | ||| | ||| ||||| | || || ||| || || | Sbjct 589989 TGCGTCGGACGACCGTGGCATTGCGGTCATTCGCAACAAGGTGAAAACGTTCGCCCAGCT 590048 Query 254177 GTCG---------ATTTCGTCGTTCC--AACCCGGCTGTCCGCCTTTCAAGCTCGTGATC 254225 | || | | || | || || |||||| || ||||| |||| ||| Sbjct 590049 GACGGCGAGCGGGACACGGACGGACGGTAAGCC--CTGTCCACCGTTCAAAATCGTCATC 590106 Query 254226 CTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAG 254285 ||||| ||||| ||| | |||||| || |||||| ||||||| ||||| ||||||||| Sbjct 590107 CTGGATGAGGCCGACGCGATGACGCACGCAGCGCAGGCCGCCCTGCGCCGCACGATGGAG 590166 Query 254286 ACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCC 254345 | | | | ||| || || || ||||||||||||||||||||| || |||| Sbjct 590167 AAGGAAACGAAAACGACACGGTTCTGTCTGGTGTGCAACTACGTGTCGCGCATTATCGAA 590226 Query 254346 CCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 ||| | | || || || |||||||||| |||| Sbjct 590227 CCGATCACATCGCGCTGTACCAAGTTTCGCTTCA 590260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073749698234752