Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq472 865 0.0 seq328 181 9e-41 seq250 131 1e-25 seq1104 123 2e-23 >seq472 Length=2253382 Score = 865 bits (958), Expect = 0.0 Identities = 1364/1949 (70%), Gaps = 33/1949 (2%) Strand=Plus/Plus Query 22103 GTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 ||||||||||| |||||||| || || ||| ||||||| ||||| || ||||| |||||| Sbjct 817645 GTCTTGTCCACCGTAAACTGGATCGCATTTACGGCCGGCTTGGTACGCAGATAGTACATG 817704 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 || || |||| ||||||||||| | || ||||| |||||||||| || ||||| | Sbjct 817705 CCAGTTTTCAATCCCATCTTCCAGCCATAGAAATGGATCGACGTCAGCTTGCCATAGTTT 817764 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 ||| | | || | |||||||| || ||||||||||||||| || ||||| ||| Sbjct 817765 GGCTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGATAAACGCGCCACGATCTGCG 817824 Query 22283 GCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 ||||| || || | || || ||| || |||||||| || |||||||| | | || Sbjct 817825 GCCATTTTGATGCACGTTTTCACCGAGATCTCCCATACCGTTTTGTACAGGTCGCGAATT 817884 Query 22343 TCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTT--T 22400 || |||||| | | ||| | |||| || || || ||| || ||||| | Sbjct 817885 TCCTGCGGTATAGCCGCAATCTTTTGGATCGATCCATTGTTG-----GACAGAATTTCGT 817939 Query 22401 TAATCGTATCG---TTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCA 22457 | || | ||| | ||||| ||| ||| ||||||||| | | |||||| |||||| Sbjct 817940 TCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAAATCCTGCAGAAGATGATGGTTCA 817999 Query 22458 CCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGA 22517 |||| || |||||||| |||| ||||| | | ||||| ||| || ||| |||| |||| Sbjct 818000 CCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGGCTCGA 818059 Query 22518 AAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTA 22577 | ||||||||||| || || || || || || ||||| ||||||||||| |||||||| | Sbjct 818060 ACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAACAGCA 818119 Query 22578 GCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGAT 22637 |||| || | | ||||||||| | || || ||| | | | ||||| |||||||| Sbjct 818120 GCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCACAGAT 818179 Query 22638 CGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGC 22697 | || || | |||| |||||| ||||| ||||| | ||| ||| |||| |||| Sbjct 818180 C---CGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTCACCGGACTGC 818236 Query 22698 CTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGC 22757 | |||||||| |||||||| |||| | ||||| | || |||||||| |||| ||||| Sbjct 818237 CCTCGTACGTCTCGTACGGTCCATCTCGAGCGGCCAACTCACAGCTCGCTTCCAGCGCGC 818296 Query 22758 CGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACG 22817 |||| || || || ||||| |||| | || | | || | |||||||||||| Sbjct 818297 CGTAGTAGATGGTTTCGAATATTTGTTGATTTAGCTTTTGAGCCTCTTCGCTTTCGTACG 818356 Query 22818 GCATA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGG 22876 | ||| ||||||| | |||||| || ||||| ||||| ||||| || |||||||| | | Sbjct 818357 G-ATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCGATCCCGATCGGCCTG 818415 Query 22877 TTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTG 22936 | || ||| || || ||||| |||| ||||| |||| ||| || || || Sbjct 818416 TGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCAATGATTTTG 818475 Query 22937 TTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCC 22996 |||| || | || || | || | | ||||||| || Sbjct 818476 TTCAGATTGCGCGTTACGGTCTTAGCGACTTCCTTCAGCTTTGCAAAGTCATACGTTTTG 818535 Query 22997 GATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCT 23056 ||| |||||| |||| | |||||||||||| ||||||||||| || ||||| || Sbjct 818536 TCTTGCTTTACAAACATGTTCAAGGCGATCGAGGCCAGATTGCATACCGCTACCTCATCC 818595 Query 23057 TTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTG 23116 || |||| |||||| ||||| || || || | ||| ||| || || ||||| | ||| Sbjct 818596 TTCGACGAGTACTCCACAATCTCAGTGCACAAGTTGGAACATTTGATGGTGCCGATATTC 818655 Query 23117 CTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCG 23176 |||||| ||||| |||||||| | ||||||||| ||||||||||| ||| || || Sbjct 818656 TGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGCCGGTTTCC 818715 Query 23177 ACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTG 23236 |||||||| ||||||||||| ||||| | ||| || | || | |||| | | Sbjct 818716 ACCTGCGATTCGATGATCGCAAACCACAGATCCTGCGCCTTCACCTGCCGCATAAAGCGA 818775 Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 || |||| ||||||| ||||| | || || || | || | ||| | || Sbjct 818776 CCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCCCCAGGTGTCCGATAGC 818835 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356 ||||| | | ||| ||||| || ||||||||| || || || || ||| Sbjct 818836 CCGGGACAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCCTCCACACGCTGCATG 818895 Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || || ||||||||||| || ||||| |||| || || ||||| |||||||| |||||| Sbjct 818896 AACAGGTCCGGTATCCAGAGTGCGTAAAACATGTCCCGTGCGCGGACCTCCTCCTTGCCG 818955 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 ||||| || |||| ||| | ||| || || | || |||||||||||||||| || | | Sbjct 818956 GTGTTTTTCTTCAGATCGAGAAACTCGAATATATCACCATGCCACGGCTCGAGATAGATG 819015 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || || || || || | ||| ||||| |||||||||||||| || ||||| |||||||| Sbjct 819016 GCGAATGCTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCGTATTGTTGTAG 819075 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCG--CCTACGCCCGCCACACTCGAAC 23594 || | ||||||||||| |||||||| || ||| | || || | | || | Sbjct 819076 ACGCGCAGCATCGGCACCAGACCGTTCGATATCCCGTTCGTA--CCGGAGATGTACGTTC 819133 Query 23595 CTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCG 23654 | || || || | ||| |||| | || ||||| ||| |||| || || || | | Sbjct 819134 CCTTCGCGCGGATACAGTGCACGTTCAGTCCGATGCCACCGGCCGACTTTGAAATTAGGG 819193 Query 23655 CGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTC---TTTGGTCGCGACCA 23711 | || || ||||| ||||||||||||||||| ||||| || || ||||| | || Sbjct 819194 CACACTGCTTCAGCGTGTCGTAGATGCCCTCAATGCTATCTTCGGACATGGTC---AACA 819250 Query 23712 AGAAACACGAAGACATTTG----CGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTG 23767 ||| || || || | || |||| |||| || |||| |||| || || | Sbjct 819251 GGAAGCAGGACGAAAGCTGGGGACGCT----GCGTGGCCGCCGCAAACATAGTTGGCGAG 819306 Query 23768 GCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCC 23827 ||||| |||||||| | | |||| |||||||| || ||||| || ||||| |||||| Sbjct 819307 GCGTGGGTAAAGTAACGCTCGGACAGCAGATTGTAGGTCTCGATCGCTGCATCGATGTCC 819366 Query 23828 TCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACG 23887 || || || || || || || |||||||||| ||||| || || | |||||| | Sbjct 819367 TCGCCATGGATGCCAATAGCAACGCGCATCAGCATGTGCTGGGGGCGCTCGACGATTTTT 819426 Query 23888 CCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTA 23947 || || || || | | ||||| |||| || |||||||| || ||||||| || Sbjct 819427 CCCTTGATCTTCAGTAAGTATGATCGTTCCAAGGTTTTAAAGCCGAAATAGTTGTACCCG 819486 Query 23948 AAGTCACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGATGTTG 24007 ||||| ||||||| | |||||||| |||| |||| || || | || | ||| Sbjct 819487 AAGTCGCGATCGTAAATGATGGCCGAGTTCAGCCGGTCGGCGTTATCCATTATCACCTTG 819546 Query 24008 TAATGAAAATTCGATATCATCGGCGTTTT 24036 |||||||| | ||| ||||| || | ||| Sbjct 819547 TAATGAAAGTCCGAGATCATGGGAGATTT 819575 >seq328 Length=4755327 Score = 181 bits (200), Expect = 9e-41 Identities = 300/432 (69%), Gaps = 6/432 (1%) Strand=Plus/Plus Query 57879 CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG---AAGGCAGAGTGGTCAATC 57935 |||||||| || |||||||| |||| | || ||| ||||| || ||| | | Sbjct 1649208 CTGTTCAATGCCATCGAAACGCTGCC---GTGCGTGAAGCGGAAGGCGGATTGGGCGCTG 1649264 Query 57936 AAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTC 57995 || ||||| ||| | ||||| || | |||| || | | || ||||| || || Sbjct 1649265 AACTGGATCTCGAGCAAGAAGGCCAACTTTGGCGAGCGGGTCGTGGCTTTCGCTGCGGTT 1649324 Query 57996 GAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTG 58055 || ||||| ||||| || ||||| || || || || ||| ||||||| || |||||| Sbjct 1649325 GAGGGTATCTTCTTCAGCGGTAGCTTCGCCGCGATCTTCTGGCTGAAGAAGCGTGGCCTG 1649384 Query 58056 ATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGAT 58115 ||||| || || || || |||||| |||| ||||||||||| || || || || Sbjct 1649385 ATGCCGGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGACGAAGGGCTGCACTGCGAC 1649444 Query 58116 TTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGAC 58175 ||||| ||||| |||| | | | || | || ||| || ||| ||| | ||| Sbjct 1649445 TTTGCCTGCCTGATGTTCAAGTATCTGGTGCAGAAGCCGTCGAAGGAGCGCGTGACGGAG 1649504 Query 58176 ATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCC 58235 || ||| ||| |||||| |||||| | ||||| | || | || || ||||||| Sbjct 1649505 ATCATCCGCGATGCGGTCCTGATCGAGCAGGAGTTCCTGACGAAGGCACTGCCGGTGGAT 1649564 Query 58236 ATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT 58295 ||||| || |||||| |||| ||||||| |||||||||||||||| ||||| | | Sbjct 1649565 ATGCTGGGCATGAACTGTGATCTGATGTCGCAGTACATTGAGTTTGTGGCCGATCGCTTG 1649624 Query 58296 TTGCTCGAACTG 58307 ||||||| ||| Sbjct 1649625 CTGCTCGAGCTG 1649636 >seq250 Length=5469655 Score = 131 bits (144), Expect = 1e-25 Identities = 171/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||||||||| |||||||| || || || || ||||| || ||||| | || || || || Sbjct 4641024 AAACATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCC 4640965 Query 31249 GTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 || |||| |||| | || || || ||| | ||||||||||||| | || || | Sbjct 4640964 TTCGGACACGATCGAGAATGTGAAGGCAAAGA-TCCAGGACAAGGAAGGCATTCCCCCAG 4640906 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 | ||||||||||| || ||||| ||||| ||| |||| || | ||| | ||| | Sbjct 4640905 ATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACT 4640846 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | |||||||| || |||||||| ||||||||||| || |||| | || |||| Sbjct 4640845 ACAACATTCAGAAGGAATCGACCCTTCATCTGGTGCTGCGACTCCGTGGTGGTA 4640792 Score = 98.7 bits (108), Expect = 9e-16 Identities = 167/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || || || ||| | || || || || Sbjct 3557418 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 3557477 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| | || || || || ||||||||| || | ||||| || Sbjct 3557478 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGAT 3557537 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| |||| || || || |||||| Sbjct 3557538 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTAC 3557597 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAG 31425 ||||| || || || ||||| ||||||||||| || | ||| | || ||| ||||| Sbjct 3557598 AACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGCCTGCGCGGTGGTGCCAAGAAG 3557657 Query 31426 CG 31427 || Sbjct 3557658 CG 3557659 >seq1104 Length=7559990 Score = 123 bits (136), Expect = 2e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 || ||| ||||| |||||||| || |||||||| || || || ||||| | || ||||| Sbjct 5394360 ATAAAATATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACTCTGGAAGTTGA 5394301 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 || || || | | | || | || || || || ||||||||| || | ||||| Sbjct 5394300 GCCATCGGATACTATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCC 5394241 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365 || ||||||||||| || |||||||| || ||| |||| || || || || Sbjct 5394240 AGATCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGA 5394181 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || || |||||||||||||||||||| || | ||| | || |||| Sbjct 5394180 CTATAACATCCAGAAGGAATCGACTCTTCATCTGGTTCTCCGTCTGCGTGGTGGTA 5394125 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || |||||||| || || || |||||| | || ||||| || ||| Sbjct 5393897 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCC 5393838 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || || || ||| | ||||||||| || | ||||| || || Sbjct 5393837 GATACGATTGAGAATGTGAAGGCAAAGA-TCCAGGACAAGGAGGGAATCCCGCCAGATCA 5393779 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || || || || ||| |||| || || || || ||||| Sbjct 5393778 GCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAA 5393719 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || |||||||||||||||||||| || Sbjct 5393718 CATCCAGAAGGAATCGACTCTTCATCTGGTTCT 5393686 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || |||||||| || || || ||||| | || ||||| || || Sbjct 5394125 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACTCTGGAGGTTGAGCCATCG 5394066 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || || || ||||||||| || | ||||| || ||| Sbjct 5394065 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 5394006 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || || ||| ||||||| || || || |||||| Sbjct 5394005 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAAC 5393946 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| || ||||||||||| || | ||| | || |||| Sbjct 5393945 ATCCAGAAGGAATCCACCCTTCATCTGGTTCTCCGTCTGCGTGGTGGTA 5393897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445759635494880