Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq472 351 1e-91 seq328 113 6e-20 >seq472 Length=2253382 Score = 351 bits (388), Expect = 1e-91 Identities = 1198/1854 (65%), Gaps = 30/1854 (2%) Strand=Plus/Plus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || || || ||||| ||||||||||| || ||||| | || | |||| || || ||| Sbjct 817678 GCCGGCTTGGTACGCAGATAGTACATGCCAGTTTTCAATCCCATCTTCCAGCCATAGAAA 817737 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 || || ||| || ||| ||| | || || || | || || || | ||||| Sbjct 817738 TGGATCGACGTCAGCTTGCCATAGTTTGGCTCCGCGACGTGAATGTTGAACGATTGCGAC 817797 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 |||||||| || || || | ||||| |||||||| ||| ||| || | || ||| Sbjct 817798 TGATCGATAAACGCGCCACGATCTGCGGCCATTTTGATGCACGTTTTCACCGAGATCTCC 817857 Query 62247 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTATTCT---GAATGGA 62302 || | ||||| || | |||| ||| || | || | | | ||| | || || Sbjct 817858 CATACCGTTTTGTACAGGTCGCG-AATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGA 817916 Query 62303 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62362 |||| | || ||| ||||| || || || ||| | | | ||| || Sbjct 817917 TCCATTGTTGGACAGAATTTCGTTCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAA 817976 Query 62363 AACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTA 62422 | | || ||||| |||| || || ||||| || || |||| || | || | |||| Sbjct 817977 ATCCTGCAGAAGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTA 818036 Query 62423 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62482 || || || ||||| || | ||| ||||| || || | |||||| || || || || Sbjct 818037 AACGTTCGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGC 818096 Query 62483 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 62542 |||||||| || |||| || | ||| | || |||| | ||| || || || Sbjct 818097 CGTCGGCATCGGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTT 818156 Query 62543 TAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAAT 62602 | | |||| ||||| ||||||| |||| | || || | || Sbjct 818157 CAACTCGGCCCAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGAT 818216 Query 62603 ACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTT 62661 || || || | | || ||| | || || || || ||||| || | || | | Sbjct 818217 GCCCTTGCTCACCGGACTGCCCT-CGTACGTCTCGTACGGTCCATCTCGAGCGGCCAACT 818275 Query 62662 TACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTT 62721 ||| ||||| || | || ||||| || |||||||| || || | | |||||| | || Sbjct 818276 CACAGCTCGCTTCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGTTGATTTAGCTTTT 818335 Query 62722 GTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAA 62781 | || || ||| || | ||||| | || || ||||| || || | || || | Sbjct 818336 GAGCCTCTTCGCTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCA 818395 Query 62782 CACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAAT 62841 | || || ||||| || || || | | |||| ||| | ||| || || | ||||| | Sbjct 818396 CGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGT 818455 Query 62842 AATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCA 62898 |||| | ||| || ||||| || ||||| | | || | ||| | | || ||||||| Sbjct 818456 AATTGACATCAATGATTTTGTTCAGATTGCGCGTTACGGT--CTTAG-CGACTTCCTTCA 818512 Query 62899 GTTTGAGAAAATCAAA----TCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCC 62954 | || ||| ||| | | | | || |||||||||||||||| || | || ||| Sbjct 818513 GCTTTGCAAAGTCATACGTTTTGTCTTGCT-TTACAAACATGTTCAAGGCGATCGAGGCC 818571 Query 62955 AGATTACACACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGAT 63012 ||||| || || |||||||||| | || || || | | ||||||||||| | | Sbjct 818572 AGATTGCATACCGCTACCTCATC--CTTCGACGAGTACTCCACAATCTCAGTGCACAAGT 818629 Query 63013 TACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 63072 | ||| ||||| || || | ||| || || ||||| || || || |||||||| | Sbjct 818630 TGGAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGT 818689 Query 63073 AAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC 63132 | || ||| | || || ||||| | ||| ||||| || ||||| ||| | | Sbjct 818690 ACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACCACAGATCCT 818749 Query 63133 GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGA 63192 | ||||| | | | | | ||| | ||||| || |||| |||| Sbjct 818750 GCGCCTTCACCTGCCGCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGA 818809 Query 63193 ACTCGTCTCCCCAAACATTGTCCAAT---CTAGGACATTCATCCGGACACATCAACGACC 63249 |||| || ||||| ||||| || | ||||| || | ||| ||||||| || Sbjct 818810 ACTCTTCGCCCCAGG---TGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCC 818866 Query 63250 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 63309 || | ||| ||| ||| || | ||| || || || || ||||| || || ||| | Sbjct 818867 ACATTTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCAGAGTGCGTAAAACA 818926 Query 63310 GATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 63369 || | || | ||||| || || || || || || |||||||| ||| | | | Sbjct 818927 TGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATA 818986 Query 63370 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCT 63429 ||||| ||||||||| || | || ||||| | |||||||||| ||||| || |||| Sbjct 818987 TATCACCATGCCACGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCT 819046 Query 63430 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATA 63489 |||| | ||| | || || || || || || | || ||| || | | |||||| |||| Sbjct 819047 GATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGATA 819106 Query 63490 TACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT-AGACCT 63548 | || || ||||||||||| || ||| | || || ||| | | | | || || Sbjct 819107 TCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGGATAC-AGTGCACGTTCAGTCCG 819165 Query 63549 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCT 63608 || || || ||| || || |||| || || | || | |||||| |||||||| || Sbjct 819166 ATGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTCA 819225 Query 63609 ATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCC 63668 |||||||| ||| |||| | | || || ||| || | ||| |||| || || Sbjct 819226 ATGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGACGCTGCGTGGCC 819285 Query 63669 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63728 || ||| | || || || ||||| ||||| | || || || |||||||| ||| Sbjct 819286 GCCGCAAACATAGTTGGCGAGGCGTGGGTAAAGTAACGCTCGGACAGCAGATTGTAGGTC 819345 Query 63729 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63788 || || |||| || || ||| ||| || || | || || ||||| | ||||||| Sbjct 819346 TCGATCGCTGCATCGATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGTGC 819405 Query 63789 TGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 63848 || || | || || ||||| || || |||| ||||| ||| |||||| |||||| Sbjct 819406 TGGGGGCGCTCGACGATTTTTCCCTTGATCTTCAGTAAGTATGATCGTTCCAAGGTTTTA 819465 Query 63849 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGC 63902 || || ||||||||||| ||||| || |||||||| || |||| || ||| Sbjct 819466 AAGCCGAAATAGTTGTACCCGAAGTCGCGATCGTAAATGATGGCCGAGTTCAGC 819519 >seq328 Length=4755327 Score = 113 bits (124), Expect = 6e-20 Identities = 182/259 (70%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 33570 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629 || ||||||| || || || ||||||||||| || ||||| | || | ||||| Sbjct 1649464 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTC 1649405 Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || || |||||||| ||||| ||||||||||| || ||||| || || | ||||| Sbjct 1649404 GAGAAGGTGAGTCCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTA 1649345 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749 ||| |||||||| || || || ||||| || || | | | ||| ||| | ||| Sbjct 1649344 CCGCTGAAGAAGATACCCTCAACCGCAGCGAAAGCCACGACCCGCTCGCCAAAGTTGGC- 1649286 Query 33750 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33804 || || || ||||| || | |||||||| |||||| || || || |||| || Sbjct 1649285 CT-TCTTGCTCGAGATCCAGTTCAGCGCCCAATCCGCCTTCCGCTTCACGCACGGCAGCG 1649227 Query 33805 TTTCTATGGCATTAAAGAG 33823 |||| |||||||| || || Sbjct 1649226 TTTCGATGGCATTGAACAG 1649208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629808042517920