Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq472 334 1e-86 >seq472 Length=2253382 Score = 334 bits (370), Expect = 1e-86 Identities = 1195/1854 (64%), Gaps = 32/1854 (2%) Strand=Plus/Plus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 || || || ||||| ||||||||||| || ||||| | || | |||| || || ||| Sbjct 817678 GCCGGCTTGGTACGCAGATAGTACATGCCAGTTTTCAATCCCATCTTCCAGCCATAGAAA 817737 Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979 || || ||| || ||| ||| | || || || | || || || | ||||| Sbjct 817738 TGGATCGACGTCAGCTTGCCATAGTTTGGCTCCGCGACGTGAATGTTGAACGATTGCGAC 817797 Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 |||||||| || || || | ||||| |||||||| ||| ||| || | || ||| Sbjct 817798 TGATCGATAAACGCGCCACGATCTGCGGCCATTTTGATGCACGTTTTCACCGAGATCTCC 817857 Query 65040 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTATTCT---GAATGGA 65095 || | ||||| || | |||| ||| || | || | | | ||| | || || Sbjct 817858 CATACCGTTTTGTACAGGTCGCG-AATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGA 817916 Query 65096 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 65155 |||| | | || ||| ||||| || || || ||| | | | ||| || Sbjct 817917 TCCATTGTTGGACAGAATTTCGTTCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAA 817976 Query 65156 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 65215 | | || ||||| | || || || || || || || |||| || | || | |||| Sbjct 817977 ATCCTGCAGAAGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTA 818036 Query 65216 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 65275 || || || ||||| || | || ||||| || || | |||||| || || || || Sbjct 818037 AACGTTCGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGC 818096 Query 65276 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 65335 |||||||| || |||| || | ||| | || |||| | ||| || || || Sbjct 818097 CGTCGGCATCGGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTT 818156 Query 65336 TAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAAT 65395 | |||| ||||| ||||||| |||| | || | || Sbjct 818157 CAACTCGGCCCAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGAT 818216 Query 65396 ACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTT 65454 || || || | | || ||| | || || ||||| ||||| || | || | | Sbjct 818217 GCCCTTGCTCACCGGACTGCCCT-CGTACGTCTCGTACGGTCCATCTCGAGCGGCCAACT 818275 Query 65455 CACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTT 65514 |||| ||||| || | || ||||| || ||||||||||| || | | |||||| | || Sbjct 818276 CACAGCTCGCTTCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGTTGATTTAGCTTTT 818335 Query 65515 GTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAA 65574 | || || ||| || | ||||| | || || ||||| || || | || || | Sbjct 818336 GAGCCTCTTCGCTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCA 818395 Query 65575 CACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAAT 65634 | || || ||||| || || || | | |||| ||| | ||| || || | ||||| | Sbjct 818396 CGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGT 818455 Query 65635 AATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCA 65691 |||| | ||| || ||||| || ||||| | | || | ||| | | || ||||||| Sbjct 818456 AATTGACATCAATGATTTTGTTCAGATTGCGCGTTACGGT--CTTAG-CGACTTCCTTCA 818512 Query 65692 GTTTGAGAAAATCAAATCGCTCATCTA---TTACAAACATGTTCAATGCAACAGATGCCA 65748 | || ||| ||| | | ||| |||||||||||||||| || | || |||| Sbjct 818513 GCTTTGCAAAGTCATACGTTTTGTCTTGCTTTACAAACATGTTCAAGGCGATCGAGGCCA 818572 Query 65749 GATTACAAACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGATT 65806 |||| || || |||||||||| | || || || | | ||||||||||| | || Sbjct 818573 GATTGCATACCGCTACCTCATC--CTTCGACGAGTACTCCACAATCTCAGTGCACAAGTT 818630 Query 65807 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 65866 ||| |||||||| || | ||| || || ||||| || || || |||||||| || Sbjct 818631 GGAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTA 818690 Query 65867 AAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 65926 || ||| | || || ||||| | ||| ||||| || ||||| ||| | | | Sbjct 818691 CAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACCACAGATCCTG 818750 Query 65927 AGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAA 65986 ||||| | | | | ||| | ||||| || |||| ||||| Sbjct 818751 CGCCTTCACCTGCCGCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAA 818810 Query 65987 CTCGTCTCCCCAAACATTGTCCAAT---CCAGGACATTCATCCGGACACATCAACGACCA 66043 ||| || ||||| ||||| || || ||||| || | ||| ||||||| ||| Sbjct 818811 CTCTTCGCCCCAGG---TGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCCA 818867 Query 66044 CTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAA 66103 | | ||| ||| ||| || | ||| || || || || ||||| || || |||| | Sbjct 818868 CATTTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCAGAGTGCG-TAAA-AC 818925 Query 66104 ATCTCTGGTTCTATGT--TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 66161 || || || | | ||||| || || || || || || |||||||| ||| | | Sbjct 818926 ATGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAAT 818985 Query 66162 ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 66221 |||||| ||||||||| || | || ||||| | |||||||||| ||||| || ||| Sbjct 818986 ATATCACCATGCCACGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCC 819045 Query 66222 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 66281 ||||| | ||| | || || || || || || | || ||| || | | ||| || ||| Sbjct 819046 TGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGAT 819105 Query 66282 GTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT-AGACC 66340 | || || || |||||||| || |||| | || || ||| | | | | || || Sbjct 819106 ATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGGATAC-AGTGCACGTTCAGTCC 819164 Query 66341 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 66400 || || || ||| || || |||| || || | || | ||| || ||||||||||| Sbjct 819165 GATGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTC 819224 Query 66401 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 66460 || ||||| || |||| | | || || ||| || | ||| |||| || | Sbjct 819225 AATGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGACGCTGCGTGGC 819284 Query 66461 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 66520 ||| ||| | || || || ||||| ||||| | || || || |||||||| || Sbjct 819285 CGCCGCAAACATAGTTGGCGAGGCGTGGGTAAAGTAACGCTCGGACAGCAGATTGTAGGT 819344 Query 66521 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 66580 ||| || |||| || || ||| ||| || || | || || ||||| | |||||| Sbjct 819345 CTCGATCGCTGCATCGATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGTG 819404 Query 66581 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 66640 ||| || | || ||||| || || || |||| ||||| ||| |||||| ||||| Sbjct 819405 CTGGGGGCGCTCGACGATTTTTCCCTTGATCTTCAGTAAGTATGATCGTTCCAAGGTTTT 819464 Query 66641 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 66694 ||| || ||||||||||| ||||| || |||||||| || ||||||| || Sbjct 819465 AAAGCCGAAATAGTTGTACCCGAAGTCGCGATCGTAAATGATGGCCGAGTTCAG 819518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658162812227760