Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq472 324 2e-83 seq328 95.1 2e-14 >seq472 Length=2253382 Score = 324 bits (358), Expect = 2e-83 Identities = 1215/1890 (64%), Gaps = 42/1890 (2%) Strand=Plus/Plus Query 70791 CTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCC 70850 |||||||| |||||||| || | | || | || ||||| |||||||||||||| Sbjct 817647 CTTGTCCACCGTAAACTGGATCGCATTTACGGCCGGCTTGGTACGCAGATAGTACATGCC 817706 Query 70851 TGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGG 70910 ||||| | || | |||| || || ||||| || ||| || ||| |||| | || Sbjct 817707 AGTTTTCAATCCCATCTTCCAGCCATAGAAATGGATCGACGTCAGCTTGCCATAGTTTGG 817766 Query 70911 ATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 70970 || || | |||||| || | ||| || |||||||| || || || | ||||| || Sbjct 817767 CTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGATAAACGCGCCACGATCTGCGGC 817826 Query 70971 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 71029 |||||| ||| ||| || | || ||||| | ||||| || | |||| ||| | Sbjct 817827 CATTTTGATGCACGTTTTCACCGAGATCTCCCATACCGTTTTGTACAGGTCGCG-AATTT 817885 Query 71030 CTTCTGGAAGGTTTGTATTCT---GAATGGATCCACCATCTGCAATAATCCTATTTTTGA 71086 | | || | | | ||| | || |||||| | | | ||| || || | Sbjct 817886 CCTGCGGTATAGCCGCAATCTTTTGGATCGATCCATTGTTGGACAGAATTTCGTTCTTCA 817945 Query 71087 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTT 71146 | || || ||| | | | ||| ||| | || |||||| | || || || | Sbjct 817946 TGTCGAGATCCCACAGACCCATGTTGGTCAAATCCTGCAGAAGATGATGGTTCACCACCT 818005 Query 71147 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACT 71206 | || || || |||| || | | | |||||| || || ||||| || | || | Sbjct 818006 GGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGGCTCGAACGATT 818065 Query 71207 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTAT 71266 |||| || || | |||||| || || || || |||||||| || |||| || || || Sbjct 818066 CATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAACAGCAGCGAAT 818125 Query 71267 TTCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGA 71324 | | || || ||| | || || || || || | |||| ||||| ||||||| Sbjct 818126 TGCGAATGCC--GTGCTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCACAGATCCGT 818183 Query 71325 TGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTATGATCCTGCAT 71383 ||| | ||||| || || | || | ||| | | Sbjct 818184 CGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTCACCGGACTGCCCT-CGT 818242 Query 71384 ATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAAT 71443 | || ||||| ||||| ||| |||| | ||||| ||||| || | || || || | Sbjct 818243 ACGTCTCGTACGGTCCATCTCGAGCGGCCAACTCACAGCTCGCTTCCAGCGCGCCGTAGT 818302 Query 71444 AAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT 71503 | ||||||||||| || | | ||| || | ||| || || ||| || | ||||| Sbjct 818303 AGATGGTTTCGAATATTTGTTGATTTAGCTTTTGAGCCTCTTCGCTTTCGTACGGATAGC 818362 Query 71504 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCT 71563 | || || ||||| || || | || || ||||| || ||||| || ||||| | | Sbjct 818363 GCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCGATCCCGATCGGCCTGTGGCGCA 818422 Query 71564 TATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 71623 |||| || | ||| || || | ||||| ||||| | ||| || ||||| || |||| Sbjct 818423 TATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCAATGATTTTGTTCAGAT 818482 Query 71624 TTC---TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA 71680 | | | || | ||| | | || ||||| || || ||| ||| | | ||| Sbjct 818483 TGCGCGTTACGGT--CTTAG-CGACTTCCTTCAGCTTTGCAAAGTCATACGTTTTGTCTT 818539 Query 71681 ---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 71737 ||||||||| ||||||||| | || |||||||| || || |||||||||| | | Sbjct 818540 GCTTTACAAACATGTTCAAGGCGATCGAGGCCAGATTGCATACCGCTACCTCATC--CTT 818597 Query 71738 CGGCA--TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 71795 || | || | | ||| |||||||| | || ||| |||||||| || | ||| || Sbjct 818598 CGACGAGTACTCCACAATCTCAGTGCACAAGTTGGAACATTTGATGGTGCCGATATTCTG 818657 Query 71796 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAAT 71855 || ||||| || || || |||||||| || || || |||| || ||||| | Sbjct 818658 CTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGCCGGTTTCCAC 818717 Query 71856 CTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTT 71915 ||| ||||| || ||||| ||| | | | ||||| | | | | | Sbjct 818718 CTGCGATTCGATGATCGCAAACCACAGATCCTGCGCCTTCACCTGCCGCATAAAGCGACC 818777 Query 71916 TTCTCTTTCGTATT--GTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT 71973 ||| | ||||| ||||| | || |||||||| || ||||| | |||| || Sbjct 818778 CTCTTTCTCGTACCCCGTGTACAGCTTC--TCGAACTCTTCGCCCCAGG---TGTCCGAT 818832 Query 71974 ---CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTC 72030 || ||||| || | ||| ||||||| |||| | | | | | || || | | Sbjct 818833 AGCCCGGGACAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCCTCCACACGCTGC 818892 Query 72031 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG--CTCCTCGT 72088 || || || || || ||||| || || |||| | || || || | | |||||| | Sbjct 818893 ATGAACAGGTCCGGTATCCAGAGTGCG-TAAA-ACATGTCCCGTGCGCGGACCTCCTCCT 818950 Query 72089 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 72148 | || || || || || |||||||| ||| | | |||||| ||||||||| || | | Sbjct 818951 TGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATATATCACCATGCCACGGCTCGAGAT 819010 Query 72149 ATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 72208 | ||||| | |||| ||||| ||||| || |||||||| | ||| | || || || | Sbjct 819011 AGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCGTATTGT 819070 Query 72209 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 72268 | || || | || ||| || | | ||| || ||| || || || |||||||| || Sbjct 819071 TGTAGACGCGCAGCATCGGCACCAGACCGTTCGATATCCCGTTCGTACCGGAGATGTACG 819130 Query 72269 TTCCACTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 72326 |||| | || || ||| ||| || | | || || || || ||| || || || Sbjct 819131 TTCCCTTCGCGCGGATACAGTGCACGTTCA--GTCCGATGCCACCGGCCGACTTTGAAAT 819188 Query 72327 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 72386 || || || | || | ||| || ||||||||||| || ||||| || |||| | | Sbjct 819189 TAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAATGCTATCTTCGGACATGGTCAA 819248 Query 72387 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 72446 || || ||| || | ||| |||| || |||| ||| | || || || || Sbjct 819249 CAGGAAGCAGGACGAAAGCTGGGGACGCTGCGTGGCCGCCGCAAACATAGTTGGCGAGGC 819308 Query 72447 GTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCA 72506 ||| ||||| | || ||||| |||||||| ||||| || |||| || || ||| Sbjct 819309 GTGGGTAAAGTAACGCTCGGACAGCAGATTGTAGGTCTCGATCGCTGCATCGATGTCCTC 819368 Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566 ||| || || | || || ||||| | ||| ||||| || | || ||||| || Sbjct 819369 GCCATGGATGCCAATAGCAACGCGCATCAGCATGTGCTGGGGGCGCTCGACGATTTTTCC 819428 Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 72626 || || |||| ||||| ||| |||||| |||||||| || ||||||||||| || Sbjct 819429 CTTGATCTTCAGTAAGTATGATCGTTCCAAGGTTTTAAAGCCGAAATAGTTGTACCCGAA 819488 Query 72627 GTCTCGTTCGTAAATAATAACCGAATTGAG 72656 ||| || |||||||| || |||| || || Sbjct 819489 GTCGCGATCGTAAATGATGGCCGAGTTCAG 819518 >seq328 Length=4755327 Score = 95.1 bits (104), Expect = 2e-14 Identities = 178/259 (69%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 42053 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTG 42112 || ||||||| || || || ||||||||||| || || || | || | ||||| Sbjct 1649464 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTC 1649405 Query 42113 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT 42172 || || |||||||| ||||| ||||||||||| || ||||| || || | || || Sbjct 1649404 GAGAAGGTGAGTCCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTA 1649345 Query 42173 CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 42232 || |||||||| || || || || || || || | | | ||| ||| | ||| Sbjct 1649344 CCGCTGAAGAAGATACCCTCAACCGCAGCGAAAGCCACGACCCGCTCGCCAAAGTTGGC- 1649286 Query 42233 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 42287 || || || ||||| || | |||||||| |||||| || || || |||| || Sbjct 1649285 CT-TCTTGCTCGAGATCCAGTTCAGCGCCCAATCCGCCTTCCGCTTCACGCACGGCAGCG 1649227 Query 42288 TTTCTATGGCATTAAAGAG 42306 |||| |||||||| || || Sbjct 1649226 TTTCGATGGCATTGAACAG 1649208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671129015462640