Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq327 206 4e-48 seq472 179 5e-40 seq328 156 6e-33 seq236 134 2e-26 seq450 109 8e-19 seq882 84.2 3e-11 >seq327 Length=13998812 Score = 206 bits (228), Expect = 4e-48 Identities = 366/533 (69%), Gaps = 3/533 (1%) Strand=Plus/Minus Query 49797 CCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAGC 49856 |||| || || | ||||| || ||||||||||| || ||| || |||| | |||| Sbjct 13134074 CCGTCGAACCGTCGATGTTCCTGTACATGATGGCGTTTATGCTAACGTCGGTGGTGGAGC 13134015 Query 49857 AGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGTGCC 49916 ||||||| | | ||||| |||||||||||||| | |||||||| |||| ||| | |||| Sbjct 13134014 AGGCGTTCTTCCTGTACAAAGCGTGCACCGTCGATCATGGCTATTCGCACGAGATTTGCC 13133955 Query 49917 ACAACATTAGCCAGTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACATTTC 49976 |||||| |||||| | || ||||| || | |||||| ||| || || |||| Sbjct 13133954 TCAACATCGAGCAGTACCAGGATATCAAAAAGCAGGTCCAGGTGACGACCTCGACCTTTC 13133895 Query 49977 ATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGCCTTTTTCCTAGGAT 50036 ||||||||||| | |||| | |||||||| | | ||||| | || || || Sbjct 13133894 ATCAGTGGAACAACATCGCCATGTACGTGGTGCCGATCGTGCTGGCCCTGTTTCTCGGCG 13133835 Query 50037 CCTATAGTGATAGGCGCGGTAGAAAGATTGTACTCGTATGTGGACTCGTAGGTAAACTCT 50096 ||| ||||| || || | ||| | |||| | || || | || || | Sbjct 13133834 CCTGGTCCGATAGACGTGGCCGCAAGCTGCCACTCATCCTCGGGCTGATGGGCAAGTTTG 13133775 Query 50097 TTTTCTCGGCAATGCTAACCGTAAACAGTCTCAAGAGC---TGGCCCGTAGAGTATATAA 50153 | | ||||| ||| | || |||| | || | | ||||| || ||||| || | Sbjct 13133774 TCTACTCGGTCATGATCGTGGTGAACACGCGCATGCCCTCGTGGCCGGTCGAGTACATCA 13133715 Query 50154 TCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGATTTGACCATATTCGCAGCGT 50213 |||||||||| | | ||||| | ||| ||||| ||||| | |||| ||||| | | Sbjct 13133714 TCTACACGGCCACGATCCCGAGCGTACTGACCGGGGCCGACATTGCCATCTTCGCCTCCT 13133655 Query 50214 GCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGCACGCTACGAGTGGGCATCT 50273 ||||||| ||||| |||| | |||| |||||| | |||||||| || | || Sbjct 13133654 GCTTTGCGTACATCTCCGACATCACGACGGTGGAGGAGCGCACGCTGCGCATTACGATAC 13133595 Query 50274 TGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCGATCGGTAGTGTG 50326 |||| ||| |||||| ||||| ||||| | |||||| ||| |||| | |||| Sbjct 13133594 TGGACGCCACCTACCTCAGCACCATGCCGATCGGTGTCGCGCTCGGCAATGTG 13133542 >seq472 Length=2253382 Score = 179 bits (198), Expect = 5e-40 Identities = 379/561 (68%), Gaps = 6/561 (1%) Strand=Plus/Minus Query 96825 GGCCTAGTGCCAATGCTCAGAATGTACAATGCAAT--GTCACGATACGTTACACAGGGCG 96882 || || ||||| ||||| | | ||||| |||| | |||| ||||| ||||| | Sbjct 819098 GGTCTGGTGCCGATGCTGCGCGTCTACAA--CAATACGGCACGGTACGTCGATCAGGGTG 819041 Query 96883 GCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTG 96942 |||| || ||||| || || | ||| |||| | || || ||||| | || | || | Sbjct 819040 GCAACAAGCGGCCTGGAGCATTCGCCATCTATCTCGAGCCGTGGCATGGTGATATATTCG 818981 Query 96943 ACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTT 97002 | ||| |||| || |||||| | ||| || |||| || || ||||| |||||| Sbjct 818980 AGTTTCTCGATCTGAAGAAAAACACCGGCAAGGAGGAGGTCCGCGCACGGGACATGTTTT 818921 Query 97003 ATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC-TGGAGC 97061 | ||||||||| | || || |||||||| |||| || | | || | | |||||| Sbjct 818920 ACGCACTCTGGATACCGGACCTGTTCATGCAGCGTGTGGAGG-CGAACGAAATGTGGAGC 818862 Query 97062 CTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCC 97121 || |||||||| || | ||||| || || || ||||||||||||||| ||| Sbjct 818861 CTGATGTGCCCGCACGATTGTCCCGGGCTATCGGACACCTGGGGCGAAGAGTTCGAGAAG 818802 Query 97122 AAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTG 97181 |||||||| |||||| ||||||| || | || | | || | || | || ||| Sbjct 818801 CTGTACACGGGGTACGAGAAAGAGGGTCGCTTTATGCGGCAGGTGAAGGCGCAGGATCTG 818742 Query 97182 TGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGAT 97241 ||| || ||| | | ||||| || || || |||||||| || ||||||||| Sbjct 818741 TGGTTTGCGATCATCGAATCGCAGGTGGAAACCGGCGTACCGTACATGCTGTACAAGGAT 818682 Query 97242 ACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGC 97301 | ||||| || || ||||| | | | ||||||||||| | ||||| ||||| Sbjct 818681 GCTTGCAATCGTAAAAGTAACCAGCAGAATATCGGCACCATCAAATGTTCCAACTTGTGC 818622 Query 97302 ACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTC 97361 || || ||||| |||||| | || ||| ||| || || ||| |||||| ||| || Sbjct 818621 ACTGAGATTGTGGAGTACTCGTCGAAGGATGAGGTAGCGGTATGCAATCTGGCCTCGATC 818562 Query 97362 AATCTGCCCAAGTTTGTAGAG 97382 || || ||||||| || Sbjct 818561 GCCTTGAACATGTTTGTAAAG 818541 Score = 122 bits (134), Expect = 1e-22 Identities = 311/471 (66%), Gaps = 2/471 (0%) Strand=Plus/Minus Query 97792 TGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTT 97851 ||||| |||| |||||||| |||||| |||| | ||| | | ||||| |||||| | Sbjct 818119 TGCTGTTGGCCCCGATGCCGACGGCTTCCACGGCACAAATTCTCGGCAACAATGAATCGT 818060 Query 97852 TTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCAATTGA 97911 | || |||| |||||| ||| | ||| | || ||| | ||| || ||||| || || Sbjct 818059 TCGAGCCGTACACGTCGAACGTTTACAATAGGCGCGTGCTGTCGGGCGAGTTCCAGGTGG 818000 Query 97912 CCAACGTGCACTTGGTTCGAGACTTGGAACGGC-TCAATCTGTGGAACGATGACATGGCC 97970 ||| || | | | || ||| | | | | ||||||| | |||||| Sbjct 817999 TGAACCATCATCTTCTGCAGGATTTG-ACCAACATGGGTCTGTGGGATCTCGACATGAAG 817941 Query 97971 CAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTG 98030 | || ||| ||||||||| || || ||||| ||| | || ||| | || | Sbjct 817940 AACGAAATTCTGTCCAACAATGGATCGATCCAAAAGATTGCGGCTATACCGCAGGAAATT 817881 Query 98031 CGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCC 98090 ||| | ||||| || || |||||||| || || ||| ||| | ||||| || Sbjct 817880 CGCGACCTGTACAAAACGGTATGGGAGATCTCGGTGAAAACGTGCATCAAAATGGCCGCA 817821 Query 98091 GACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACC 98150 || | || | | || || ||| ||||||||||| | |||| || ||||| | | Sbjct 817820 GATCGTGGCGCGTTTATCGATCAGTCGCAATCGTTCAACATTCACGTCGCGGAGCCAAAC 817761 Query 98151 TACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATG 98210 || | |||| ||||| || || || | ||||| | ||| | || || |||||| Sbjct 817760 TATGGCAAGCTGACGTCGATCCATTTCTATGGCTGGAAGATGGGATTGAAAACTGGCATG 817701 Query 98211 TACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 ||||||||| | || ||| ||||| ||||| || | |||||||||||| Sbjct 817700 TACTATCTGCGTACCAAGCCGGCCGTAAATGCGATCCAGTTTACGGTGGAC 817650 >seq328 Length=4755327 Score = 156 bits (172), Expect = 6e-33 Identities = 202/278 (73%), Gaps = 11/278 (4%) Strand=Plus/Plus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | || ||||| |||||||| |||||||| ||||||||||||||| || | || | Sbjct 1648813 AGGCGGAAGCTTCCTTCTGGACGGTGGAAGAGGTTGATCTGTCCAAGGACATGAAGGACT 1648872 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTC 125153 ||||| ||| ||||||| |||||| | || || || ||| | |||||||| Sbjct 1648873 GGGAG--TCG-----CTGAAACCGAGCGAACGCCACTTCATTTCCCACGTGCTGGCCTTC 1648925 Query 125154 TTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTG 125213 ||||||| ||||| || ||||| ||||| |||||| || ||| ||| || ||| || Sbjct 1648926 TTTGCCGCGTCCGACGGTATCGTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTG 1648985 Query 125214 ACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCG 125273 || | |||| | ||||| ||||| ||||| || ||| || || |||||| Sbjct 1648986 CAGGTTACGGAGGCGCGCTGCTTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGC 1649045 Query 125274 GAAATGTACTCTACACTGATTGACATGTACATTCGCGA 125311 || |||||||| ||||| |||| |||||| ||||| Sbjct 1649046 GAGATGTACTCGCTGCTGATCGACACGTACATCCGCGA 1649083 >seq236 Length=99004 Score = 134 bits (148), Expect = 2e-26 Identities = 315/472 (67%), Gaps = 14/472 (3%) Strand=Plus/Plus Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160 ||| ||| | ||||| ||||| || || || || | | ||||| |||||||| || | Sbjct 47972 TTTCCGGAAGAAGATTACTCCTGCACGGGGGCCACGTAATGTCTTATGCGTTGTGGTACT 48031 Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCC-GCAA 127219 |||| || ||| || || || ||||| ||| | |||||| | ||||| | || Sbjct 48032 AACAACATCCGCATATTCGAATGGCGACGGAATCACTCCGGCCGCAA-CTAGCCCAGAAA 48090 Query 127220 TGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTC 127279 | ||||| ||||| || | || | | || | | |||||| || ||||| | | Sbjct 48091 TATGTGCCATATCTGCGAACAAATATGCACCATTTTGGTTGGCAATTTCCCGGAACCTTT 48150 Query 127280 TATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATA 127339 | ||||||| | || | ||||| | || || || || | | |||||||| | Sbjct 48151 TGTAGTCCAGACAACGCGAGTAGCACGAAATACCAGCAATAATAACTTTCGGTTTGAAGA 48210 Query 127340 GATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGT 127399 | || |||| | | ||| | || |||| | ||||| ||||| || || | Sbjct 48211 GGCGCGCTGTCTCCTCCATCTTGTCGTAATCGATCAACCCAGTAACTGGATCGACTTTAT 48270 Query 127400 ACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CG-TTGCG----GAATC 127447 | |||||||||||||| |||| ||||||||| || | || ||| | ||| | Sbjct 48271 ATGGCATGCTTTCGAAGAAGATTGATGTAGCAGATATTTTTTTCGTTTGAGTCATGAAAC 48330 Query 127448 CGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAA 127507 |||| || | || || |||||||| ||||| || |||||||| | |||||||||| || Sbjct 48331 CGTGGGTTAAATGACCACCGTCGGGTAGATCAAGGCCCATGATACGTCCGTGCGGTTCAA 48390 Query 127508 CGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTAC 127559 | |||||||||| ||||| || || || || || |||||||| || Sbjct 48391 TAAGAGCAGTGTACACAGCAAAATTTGCTGGTGAACCAGAATACGGTTGAAC 48442 >seq450 Length=2355463 Score = 109 bits (120), Expect = 8e-19 Identities = 239/351 (68%), Gaps = 8/351 (2%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || ||| |||| || || || || || |||||| | |||| || ||| || | Sbjct 1927405 GGGGATTTGGGCCCGGTATATGGGTTTCAGTGGCGCCACTTTGGTGCCACCTACAAAACA 1927464 Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCATTGACACTC 70184 ||| | ||| || || | |||||||| | ||||| || | || | | || || | Sbjct 1927465 TGCCACGAC-GATTACACAGGTCAGGGAATAGATCAGCTGGCTGA-AGTGATCGAAAAAA 1927522 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | |||| |||||| ||| | | ||| | |||||| | ||||||||| | ||| | | Sbjct 1927523 TTAAGAACAATCCCTACGATCGTCGAATCATCATGTGCGCTTGGAATCCTTCTGATATTC 1927582 Query 70245 ACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGT--ACGATGGCAA 70302 | ||||||||||| || || ||||| ||||| ||||||| |||| ||||| | Sbjct 1927583 CTAACATGGCACTACCGCCATGCCACTGCTTGGCACAGTTTT--TCGTTAGTGATGGAGA 1927640 Query 70303 ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACAT 70362 |||| || |||||||| | || ||| | || || || || ||||||||||| Sbjct 1927641 GCTGTCGTGTCAGATGTATCAACGTTCGGCTGACGTAGGTCTGGGCGTGCCCTTTAACAT 1927700 Query 70363 TGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAA 70413 ||| ||||| || || |||| |||||||| || || | ||||| || || Sbjct 1927701 TGCCAGCTACTCCTTGCTGACCCACATGATCGCGCATGTCACCGGACTAAA 1927751 >seq882 Length=7972872 Score = 84.2 bits (92), Expect = 3e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 134241 CTCACAAATCAGTTGTGCGATGCGATCACCCTTTGACACTACAAAG-TCGTCATCGGAAT 134299 ||| ||||| | |||||||||||||| || || ||| ||||| | ||| ||||| | Sbjct 56832 CTCGCAAATAAACTGTGCGATGCGATCCCCTTTCTTAACTTCAAAGTTTGTC-TCGGAGT 56890 Query 134300 GGTTAAAGAGGACCACTCCAATGTTTCCAGTATAGTCGCGGTCCACGACACCGGCTCCGA 134359 | || || || || ||||| | ||| || ||||| ||| ||||||||||| || | Sbjct 56891 GATTGAACAGTACAACTCCGACGTTGCCCCGGTAGTCCTCGTCGACGACACCGGCGCCCA 56950 Query 134360 CGTCGATTCCGTACTTGGCTGCCAGTTTGGATCGCGGAGCAATCCTACCGTAGCAACCTT 134419 | ||||| || || | |||| ||| || ||||| | || || ||||| |||| Sbjct 56951 CATCGATGAAGTTTTTCACAGCCAAACCGGAACGTGGAGCCACCCGGCCATAGCATCCTT 57010 Query 134420 CCGGGATCAGTACGCCGAGGTCTGTGTTGACGAGC 134454 |||| | | | || || ||| || | |||||| Sbjct 57011 CCGGCACCTGGACCTGGATGTCGGTCATCACGAGC 57045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741047954426640