Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq272 120 7e-22 >seq272 Length=5604218 Score = 120 bits (132), Expect = 7e-22 Identities = 223/322 (69%), Gaps = 4/322 (1%) Strand=Plus/Minus Query 238566 GAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTA 238625 |||| ||| |||| || || || ||||| || |||||| | || ||||| | Sbjct 4889136 GAGACGGCCAAAACGCATGACGATCTGTGGAACTCGGCCCAGCTGCAGATGGTGAAGGAG 4889077 Query 238626 GGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGA 238685 ||||| ||||| | ||| | || ||||| ||||| |||||||| || || ||||| | | Sbjct 4889076 GGCAAGATGCACGGCTTCCTGCGCATGTACTGGGCCAAAAAGATTCTGGAGTGGACGAAA 4889017 Query 238686 TCTCCAAAGGAAGCTCTTAGATATAGT-ATTTATCTGAACGATAAATACGAACTCGACGG 238744 | || ||||||| ||| || | | || |||||||||||| ||| || || || Sbjct 4889016 ACGCCCGAGGAAGCGCTT-GAGACGGCGATCTATCTGAACGATCGCTACAGTCTGGATGG 4888958 Query 238745 TACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGAT-AGGG 238803 ||||| ||||| ||||| ||||| |||||||| || || | |||||| |||| Sbjct 4888957 GCGCGATCCGAACGGGTACGTCGGTTGCATGTGGTCGATCGCGGGCATCCACGATCAGGG 4888898 Query 238804 CATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGA 238863 | ||| ||| | || ||||| ||| || | |||||||| ||||| ||| ||| Sbjct 4888897 C-TGGAAGGAGCGCGAAATCTTTGGCAAAATTCGGTACATGAACTATGACGGATGCAAGC 4888839 Query 238864 AAAAATTTGATGTAAATGCTTT 238885 ||||| | || ||||| || Sbjct 4888838 GTAAATTCAACGTGAATGCGTT 4888817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151380490717512