Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq250 107 2e-18 seq1104 93.3 4e-14 >seq250 Length=5469655 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | ||| | |||||| || |||||| || ||||||||||| | Sbjct 3557648 ACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGA 3557589 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || | |||||||||||||| ||| || | || | |||||||||||| ||| Sbjct 3557588 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 3557529 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| || ||| ||| | | | | || ||||| | | ||| Sbjct 3557528 GATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 3557469 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || ||||| ||||| ||||| ||||| || || ||||||||| || Sbjct 3557468 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 3557417 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| | |||||| || ||||| ||||||||||| || | | | || || | |||| Sbjct 4640811 CACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTG-CGACCATCCT 4640869 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| || | || | |||||||||||| || | | |||||||||| Sbjct 4640870 CCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCT 4640929 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | | || || || | || ||| ||| | ||| ||||| | Sbjct 4640930 GGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCT 4640989 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | |||||||| |||||||| ||||||||||| Sbjct 4640990 TGCCGGTGAGTGTTTTCACGAAAATCTGCAT 4641020 >seq1104 Length=7559990 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||| ||||| || ||||| || || | || || | || |||||||| Sbjct 5393922 ATGAAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTG 5393981 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | |||||||||||| ||| | | ||||||||| || || Sbjct 5393982 CTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTT 5394041 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | | || ||||| | | ||| ||| | || ||||| || ||||| Sbjct 5394042 CGCCTTCACATTCTCGATCGTATCCGATGGCTCAACCTCCAGAGTGATGGTCTTTCCGGT 5394101 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||||| ||||||||||| Sbjct 5394102 CAGAGTTTTCACGAAAATCTGCAT 5394125 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || ||||| || ||||| || || | || || | ||||||||||| Sbjct 5393694 ATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTG 5393753 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| | | || | |||||||||||| ||| | | ||||||||| || || Sbjct 5393754 CTTTCCGGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTT 5393813 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | | || ||||||| || ||| || | || ||||| || ||||| Sbjct 5393814 TGCCTTCACATTCTCAATCGTATCGGAAGGCTCAACTTCCAGGGTGATGGTCTTTCCGGT 5393873 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||||| ||||||||||| Sbjct 5393874 CAGAGTTTTCACGAAAATCTGCAT 5393897 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || ||||| || ||||| || || | || || | ||||||||||| Sbjct 5394150 ATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTG 5394209 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | |||||||||||| ||| | | ||||||||| || || Sbjct 5394210 CTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTT 5394269 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | | || ||||| | | ||| || | || ||||| || ||||| Sbjct 5394270 CGCCTTCACATTCTCAATAGTATCCGATGGCTCAACTTCCAGAGTGATGGTCTTTCCGGT 5394329 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||||| ||||||||||| Sbjct 5394330 CAGAGTTTTCACGAAAATCTGCAT 5394353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421244967325214