Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq299 105 8e-18 >seq299 Length=36164 Score = 105 bits (116), Expect = 8e-18 Identities = 193/276 (70%), Gaps = 10/276 (4%) Strand=Plus/Minus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| |||||| | |||||| | |||||| | ||||| |||||| | || || Sbjct 16804 ATTGGGATTTTGGAAGAATGGGCATTGGTGGATTGGATCGTGAATTTAATGCGATATTTC 16745 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATC-GAAATAATaaaaaaaTTAGGCTGTAAA 164511 |||| || |||||||| | | |||| | | || | | || || | || |||||| Sbjct 16744 GACGTGCTTTTGCTTCGCG-TGTTTTCCCACCAGAGGTGGTTGAACAACTGGGATGTAAA 16686 Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571 || |||| || ||| | || |||||||||||||| ||||||||| | ||||| ||| Sbjct 16685 CACGTAAAGGGCATTCTTCTATATGGACCTCCTGGTACTGGTAAAACACTTATGGCGCGA 16626 Query 164572 TGCATT-GCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATT 164627 ||| | ||| | ||||| ||| || || || || || |||||||| | | Sbjct 16625 CAAATTGGAACAA--TGTTAAATGCTCGAGAACC--AAAGATAGTAAATGGTCCGCAGAT 16570 Query 164628 ATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGT 164663 || | |||||||| ||||| |||||||||||||| Sbjct 16569 TTTAGATAAATATGTCGGTGAATCAGAAGCTAATGT 16534 Score = 104 bits (114), Expect = 3e-17 Identities = 261/396 (66%), Gaps = 18/396 (5%) Strand=Plus/Minus Query 164722 TTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT--------- 164772 ||||| | || |||| ||||| |||||||| |||| ||| |||||| Sbjct 16337 TTACACATAATAATTTTCGATGAAATAGATGCAATTTGTAAAGCTCGTGGTACTGTCGGC 16278 Query 164773 -GATAATAT--TATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTA 164829 || | | | | | |||||| | || || || || || | | |||||||||||||| Sbjct 16277 GGAAATTCTGGTGTGCATGATACGGTTGTCAACCAACTGTTGGCAAAAATAGATGGTGTT 16218 Query 164830 GAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGAT 164889 || ||||| || ||||| | | || |||||||| ||| ||| | || || || Sbjct 16217 GAGCAATTAAACAACATTTTGGTAATTGGAATGACCAATCGAAGAGATATGATAGACGAA 16158 Query 164890 GCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAA 164949 || || ||| |||||||||| ||||| | |||| ||||| | | || | ||||| Sbjct 16157 GCATTGTTAAGACCTGGTCGTCTAGAAGTTCAAATGGAAATCAGTCTTCCTAATGAAGAA 16098 Query 164950 GGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAA---ATGAAATCCTGTGATATATTA 165006 || || | |||||||| || | ||| ||| | ||||| | | | | ||| Sbjct 16097 GGTCGTGTGCAAATTTTGAATATACAT---ACTAGACGCATGAAGGAGTTTAAAAAGTTA 16041 Query 165007 TCTCCCGATGTAGATTTAAATAAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAA 165066 |||| || ||||| || | | | | | |||||||||| ||| ||||||||| Sbjct 16040 GCTCCTGACGTAGACTTGCGCGAGCTTGGTCAAAAGACTAAAAATTTTAGCGGTGCTGAA 15981 Query 165067 TTAGAGGGATTAGTAAGAGCCGCTCAATCAACCGCA 165102 | || ||||| ||| | || || ||||| |||||| Sbjct 15980 CTGGAAGGATTGGTACGTGCAGCGCAATCCACCGCA 15945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595862957642400