Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq261 89.7 3e-13 seq438 86.0 3e-12 seq2 86.0 3e-12 >seq261 Length=5803121 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||||||||||||||||||||||||||| || Sbjct 4863850 AATTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAAC 4863791 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||| ||||| Sbjct 4863790 CAGCTGAGCTATGGGGCC 4863773 Score = 89.7 bits (98), Expect = 3e-13 Identities = 70/83 (84%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 11441 AATAAAAAAT-CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || ||||| | || |||||| | || |||||||||| |||||||||||||||||||| Sbjct 4910979 AAAAAAAAGTACACATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCA 4911038 Query 11500 CGACGCTCTRACCAACTGAGCTA 11522 ||||||||| |||| |||||||| Sbjct 4911039 CGACGCTCTAACCAGCTGAGCTA 4911061 Score = 87.8 bits (96), Expect = 9e-13 Identities = 76/94 (81%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||||| | | ||| |||| | |||||| | || |||||||||| ||||||||| Sbjct 4908131 AAATATTGGAGTAA-AAAACGTTTCATTGGCTCCAGAGAGGATCGAACTCACGACCTTCG 4908189 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTA 11522 |||||||||||||||||||| |||| |||||||| Sbjct 4908190 CGTTATTAGCACGACGCTCTAACCAGCTGAGCTA 4908223 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 4849641 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 4849582 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||| | ||||| Sbjct 4849581 TGAGCTATGGAGCCGT 4849566 Score = 86.0 bits (94), Expect = 3e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| | ||||| | || |||||||||| |||||||||||||||||||||| Sbjct 4865216 ATAAAAATATACCTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACG 4865157 Query 11502 ACGCTCTRACCAACTGAGCTA 11522 ||||||| |||| |||||||| Sbjct 4865156 ACGCTCTAACCAGCTGAGCTA 4865136 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 4852951 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 4852892 Query 11515 CTGAGCTA 11522 |||||||| Sbjct 4852891 CTGAGCTA 4852884 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 4908439 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 4908498 Query 11515 CTGAGCTA 11522 |||||||| Sbjct 4908499 CTGAGCTA 4908506 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 4863392 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 4863333 Query 11516 TGAGCTA 11522 ||||||| Sbjct 4863332 TGAGCTA 4863326 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 4864394 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 4864335 Query 11516 TGAGCTA 11522 ||||||| Sbjct 4864334 TGAGCTA 4864328 >seq438 Length=11078434 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 6890222 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 6890163 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||| | |||| Sbjct 6890162 CTGAGCTATGGAGCCG 6890147 >seq2 Length=6617244 Score = 86.0 bits (94), Expect = 3e-12 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 608777 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 608836 Query 11516 TGAGCTAATGGGCCGTCGA 11534 ||||||| | ||||| || Sbjct 608837 TGAGCTATGGAGCCGTTGA 608855 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 606862 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 606921 Query 11516 TGAGCTAATGGGCCG 11530 ||||||| | |||| Sbjct 606922 TGAGCTATGGAGCCG 606936 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 672332 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 672273 Query 11516 TGAGCTAATGGGCCG 11530 ||||||| | |||| Sbjct 672272 TGAGCTATGGAGCCG 672258 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261487331074264