Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq250 122 8e-23 seq327 118 1e-21 seq1104 111 1e-19 >seq250 Length=5469655 Score = 122 bits (134), Expect = 8e-23 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 ||||| ||||| || | || |||||||| || | ||| || ||| | |||| Sbjct 4640805 TCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACC 4640864 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||||||| || ||| | ||||| | | ||||||||||| ||||| ||||| || Sbjct 4640865 ATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTT 4640924 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || |||||||| || ||| ||||| | | ||||| |||| ||||| Sbjct 4640925 GTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGAT 4640984 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 ||| || || || || |||||||| || ||||||||| || Sbjct 4640985 GGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTTT 4641024 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| || | || || ||||| || | ||| |||||| || ||| | | Sbjct 3557635 CGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGCGTGCGGCCA 3557576 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | ||||| | | ||||||||||| || || || || ||| Sbjct 3557575 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTG 3557516 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || ||| || || | | | ||||| |||| || ||| Sbjct 3557515 TCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATG 3557456 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||| || ||||||||||| Sbjct 3557455 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 3557421 >seq327 Length=13998812 Score = 118 bits (130), Expect = 1e-21 Identities = 155/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCCT 94856 |||||||| | | || ||||| || | ||| || ||| || || || | |||| Sbjct 3501138 ACCAAGTGAAGGGGTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCG--TCCT 3501081 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||||||| || ||| | ||||| || | |||||||||||||||||||| || || || | Sbjct 3501080 CCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTATCCT 3501021 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || ||||| ||| ||| ||||| | | ||||| || | ||||||||| | Sbjct 3501020 GGATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCT 3500961 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | ||||| || || ||||| ||||||||||||| Sbjct 3500960 TGCCAGTCAGCGTCTTCACGAAGATCTGCATGC 3500928 >seq1104 Length=7559990 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| || | ||| |||||||| || | |||||| || || ||| | ||||||| Sbjct 5393689 ACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCC 5393748 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| |||||| ||||||| | | ||||||||||| || || || || ||||| | Sbjct 5393749 AGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGG 5393808 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || |||||||| || | | || || | | || || || | |||||||| ||| Sbjct 5393809 ATCTTTGCCTTCACATTCTCAATCGTATCGGAAGGCTCAACTTCCAGGGTGATGGTCTTT 5393868 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||||||||| || |||||||| Sbjct 5393869 CCGGTCAGAGTTTTCACGAAAATCTGCAT 5393897 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| || | ||| |||||||| || | |||||| || || ||| | ||||||| Sbjct 5394145 ACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCC 5394204 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| ||||| | ||||| | | ||||||||||| || || || || ||||| | Sbjct 5394205 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGG 5394264 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| || | | ||| || | | || || || | |||||||| ||| Sbjct 5394265 ATCTTCGCCTTCACATTCTCAATAGTATCCGATGGCTCAACTTCCAGAGTGATGGTCTTT 5394324 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||||||||| || |||||||| Sbjct 5394325 CCGGTCAGAGTTTTCACGAAAATCTGCAT 5394353 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | |||||| || || ||| | ||| |||||||| |||||| Sbjct 5393929 GTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 5393988 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | ||||||||||| || || || || ||||| | || || ||||| Sbjct 5393989 GCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTC 5394048 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || ||| || || | | || || || | |||||||| ||||| || |||||| Sbjct 5394049 ACATTCTCGATCGTATCCGATGGCTCAACCTCCAGAGTGATGGTCTTTCCGGTCAGAGTT 5394108 Query 94991 TTCACAAAGATCTGCAT 95007 ||||| || |||||||| Sbjct 5394109 TTCACGAAAATCTGCAT 5394125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448284397181040