Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq405 197 2e-46 seq316 188 1e-43 >seq405 Length=2887246 Score = 197 bits (218), Expect = 2e-46 Identities = 204/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| ||| || ||||||||||| || ||||||||||| || ||| Sbjct 2838682 GCGAAGCGTCACCGCAAGGTTCTGCGTGATAACATCCAGGGCATCACCAAGCCGGCCATC 2838623 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| ||||||||||| |||||| ||||||| || |||| || |||| Sbjct 2838622 CGACGTCTGGCTCGCCGTGGTGGAGTGAAGCGTATCTCTGGCCTGATCTACGAGGAGACG 2838563 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||||| ||| ||| |||| |||||| | || |||||| Sbjct 2838562 CGTGGCGTACTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCCGTGACGTACACCGAG 2838503 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| | |||||| | ||||| || |||| || || ||| Sbjct 2838502 CACGCCAAGCGCAAGACCGTCACCGCTATGGATGTTGTCTACGCGCTGAAGCGCCAGGGC 2838443 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| ||| ||||| Sbjct 2838442 CGCACACTGTACGGTTTCGGAGGTTAA 2838416 >seq316 Length=4724671 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| || || ||||||||||| || ||||||||||| || ||| Sbjct 3576776 GCCAAGCGTCATCGCAAGGTGCTGCGCGATAACATCCAGGGCATCACCAAGCCCGCCATC 3576835 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| ||||| || || |||||| |||| || || |||| ||||||| Sbjct 3576836 CGCCGTCTGGCTCGCCGTGGCGGCGTGAAGCGTATCTCCGGCCTGATCTACGAAGAGACG 3576895 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||||| ||| ||| |||| ||||| || ||| |||||| Sbjct 3576896 CGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGATGCGGTCACCTACACCGAG 3576955 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| ||||| | |||||| | || || || |||| || || ||| Sbjct 3576956 CACGCCAAGCGCAAGACGGTCACGGCGATGGATGTGGTGTACGCTCTGAAGCGCCAGGGC 3577015 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || || || ||| ||||| Sbjct 3577016 CGTACGCTCTACGGATTCGGAGGTTAA 3577042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074090031302