Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq472 365 6e-96 seq328 113 6e-20 >seq472 Length=2253382 Score = 365 bits (404), Expect = 6e-96 Identities = 1203/1855 (65%), Gaps = 34/1855 (2%) Strand=Plus/Plus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075 || || || ||||| ||||||||||| || ||||| | || | |||| || || ||| Sbjct 817678 GCCGGCTTGGTACGCAGATAGTACATGCCAGTTTTCAATCCCATCTTCCAGCCATAGAAA 817737 Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135 || || ||| || ||| ||| | || || || | || || || | ||||| Sbjct 817738 TGGATCGACGTCAGCTTGCCATAGTTTGGCTCCGCGACGTGAATGTTGAACGATTGCGAC 817797 Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 |||||||| || || || | ||||| |||||||| ||| ||| || | || ||| Sbjct 817798 TGATCGATAAACGCGCCACGATCTGCGGCCATTTTGATGCACGTTTTCACCGAGATCTCC 817857 Query 62196 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTATTCT---GAATGGA 62251 || | ||||| || | |||| ||| || | || | | | ||| | || || Sbjct 817858 CATACCGTTTTGTACAGGTCGCG-AATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGA 817916 Query 62252 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62311 |||| | | || ||| ||||| || || || ||| | | | ||| || Sbjct 817917 TCCATTGTTGGACAGAATTTCGTTCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAA 817976 Query 62312 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 62371 | | || ||||| | || || || || || || || |||| || | || | |||| Sbjct 817977 ATCCTGCAGAAGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTA 818036 Query 62372 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62431 || || || ||||| || | ||| ||||| || || | |||||| || || || || Sbjct 818037 AACGTTCGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGC 818096 Query 62432 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 62491 |||||||| || |||| || | ||| | || |||| | ||| || || || Sbjct 818097 CGTCGGCATCGGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTT 818156 Query 62492 TAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAAT 62551 | |||| ||||| ||||||| |||| | || | || Sbjct 818157 CAACTCGGCCCAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGAT 818216 Query 62552 ACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTT 62610 || || || | | || ||| | || || ||||| ||||| || | || | | Sbjct 818217 GCCCTTGCTCACCGGACTGCCCT-CGTACGTCTCGTACGGTCCATCTCGAGCGGCCAACT 818275 Query 62611 CACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTT 62670 |||| ||||| || | || ||||| || ||||||||||| || | | |||||| | || Sbjct 818276 CACAGCTCGCTTCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGTTGATTTAGCTTTT 818335 Query 62671 GTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAA 62730 | || || ||| || | ||||| | || || ||||| || || | || || | Sbjct 818336 GAGCCTCTTCGCTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCA 818395 Query 62731 CACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAAT 62790 | || || ||||| || || || | | |||| ||| | ||| || || | ||||| | Sbjct 818396 CGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGT 818455 Query 62791 AATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCA 62847 |||| | ||| || ||||| || ||||| | | || | ||| | | || ||||||| Sbjct 818456 AATTGACATCAATGATTTTGTTCAGATTGCGCGTTACGGT--CTTAG-CGACTTCCTTCA 818512 Query 62848 GTTTGAGAAAATCAAA----TCGCCCATCTATTACAAACATGTTCAAGGCAACAGATGCC 62903 | || ||| ||| | | | | || ||||||||||||||||||| | || ||| Sbjct 818513 GCTTTGCAAAGTCATACGTTTTGTCTTGCT-TTACAAACATGTTCAAGGCGATCGAGGCC 818571 Query 62904 AGATTACAAACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGAT 62961 ||||| || || |||||||||| | || || || | | ||||||||||| | | Sbjct 818572 AGATTGCATACCGCTACCTCATC--CTTCGACGAGTACTCCACAATCTCAGTGCACAAGT 818629 Query 62962 TACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 63021 | ||| ||||| || || | ||| || || ||||| || || || |||||||| | Sbjct 818630 TGGAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGT 818689 Query 63022 AAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC 63081 | || ||| | || || ||||| | ||| ||||| || ||||| ||| | | Sbjct 818690 ACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACCACAGATCCT 818749 Query 63082 GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGA 63141 | ||||| | | | | | ||| | ||||| || |||| |||| Sbjct 818750 GCGCCTTCACCTGCCGCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGA 818809 Query 63142 ACTCGTCTCCCCAAACATTGTCCAAT---CCAGGACATTCATCCGGACACATCAACGACC 63198 |||| || ||||| ||||| || || ||||| || | ||| ||||||| || Sbjct 818810 ACTCTTCGCCCCAGG---TGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCC 818866 Query 63199 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 63258 || | ||| ||| ||| || | ||| || || || || ||||| || || |||| | Sbjct 818867 ACATTTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCAGAGTGCG-TAAA-A 818924 Query 63259 GATCTCTGGTTCTATGT--TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 || || || | | ||||| || || || || || || |||||||| ||| | | Sbjct 818925 CATGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAA 818984 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 |||||| ||||||||| || | || ||||| | |||||||||| ||||| || || Sbjct 818985 TATATCACCATGCCACGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACC 819044 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 |||||| | ||| | || || || || || || | || ||| || | | |||||| || Sbjct 819045 CTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGA 819104 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGAC 63495 ||| || || ||||||||||| || |||| | || || ||| | | | | || | Sbjct 819105 TATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGGATAC-AGTGCACGTTCAGTC 819163 Query 63496 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCT 63555 | || || || ||| || || |||| || || | || | |||||| ||||| |||| Sbjct 819164 CGATGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCT 819223 Query 63556 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 63615 | |||||||| ||| |||| | | || || ||| || | ||| |||| || Sbjct 819224 CAATGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGACGCTGCGTGG 819283 Query 63616 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63675 |||| ||| | || || || ||||| ||||| | || || || |||||||| | Sbjct 819284 CCGCCGCAAACATAGTTGGCGAGGCGTGGGTAAAGTAACGCTCGGACAGCAGATTGTAGG 819343 Query 63676 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63735 |||| || |||| || || ||| ||| || || | || || ||||| | ||||| Sbjct 819344 TCTCGATCGCTGCATCGATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGT 819403 Query 63736 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63795 |||| || | || ||||| || || || |||| ||||| ||| |||||| |||| Sbjct 819404 GCTGGGGGCGCTCGACGATTTTTCCCTTGATCTTCAGTAAGTATGATCGTTCCAAGGTTT 819463 Query 63796 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850 |||| || ||||||||||| ||||| || |||||||| || ||||||| || Sbjct 819464 TAAAGCCGAAATAGTTGTACCCGAAGTCGCGATCGTAAATGATGGCCGAGTTCAG 819518 >seq328 Length=4755327 Score = 113 bits (124), Expect = 6e-20 Identities = 182/259 (70%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 33292 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 33351 || ||||||| || || || ||||||||||| || ||||| | || || ||||| Sbjct 1649464 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTC 1649405 Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411 || || |||||||| ||||| ||||||||||| || ||||| || || | ||||| Sbjct 1649404 GAGAAGGTGAGTCCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTA 1649345 Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33471 || |||||||| || || || ||||| || || | | | ||| ||| | ||| Sbjct 1649344 CCGCTGAAGAAGATACCCTCAACCGCAGCGAAAGCCACGACCCGCTCGCCAAAGTTGGC- 1649286 Query 33472 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33526 || || || ||||| || | |||||||| |||||| || || || |||| || Sbjct 1649285 CT-TCTTGCTCGAGATCCAGTTCAGCGCCCAATCCGCCTTCCGCTTCACGCACGGCAGCG 1649227 Query 33527 TTTCTATGGCATTAAAGAG 33545 |||| |||||||| || || Sbjct 1649226 TTTCGATGGCATTGAACAG 1649208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622937746776240