Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq272 187 2e-42 seq472 113 4e-20 >seq272 Length=5604218 Score = 187 bits (206), Expect = 2e-42 Identities = 226/305 (74%), Gaps = 2/305 (1%) Strand=Plus/Minus Query 71670 AAACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTC 71729 |||||||||| || || ||||| | || |||| ||| | || ||||| || || | Sbjct 4889126 AAACGCATGACGATCTGTGGAACTCGGCCCAGCTGCAGATGGTGAAGGAGGGCAAGATGC 4889067 Query 71730 ACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGC 71789 |||| | ||| |||||||||||||||||||||||||| |||||||| |||| |||||| Sbjct 4889066 ACGGCTTCCTGCGCATGTACTGGGCCAAAAAGATTCTGGAGTGGACGAAAACGCCCGAGG 4889007 Query 71790 AGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTA 71849 | ||||| ||| | || ||||| |||||| | |||||||| || || |||||||| | Sbjct 4889006 AAGCGCTTGAGACGGCGATCTATCTGAACGATCGCTACAGTCTGGATGGGCGCGATCCGA 4888947 Query 71850 ACGGTTATGTCGGTTGCATGTGGAGCATTTGCGGTC-TTCACGATAGAAGCTTTTTAGAA 71908 |||| || ||||||||||||||| | | |||| | | |||||| ||| || Sbjct 4888946 ACGGGTACGTCGGTTGCATGTGG-TCGATCGCGGGCATCCACGATCAGGGCTGGAAGGAG 4888888 Query 71909 CGTCAAGTGTTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTTCAAT 71968 || || | ||||| |||||||| || ||||| | | || ||| | || || ||||| Sbjct 4888887 CGCGAAATCTTTGGCAAAATTCGGTACATGAACTATGACGGATGCAAGCGTAAATTCAAC 4888828 Query 71969 GTGAA 71973 ||||| Sbjct 4888827 GTGAA 4888823 >seq472 Length=2253382 Score = 113 bits (124), Expect = 4e-20 Identities = 333/504 (66%), Gaps = 11/504 (2%) Strand=Plus/Plus Query 147447 AGATGCTGATTGACCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTA 147506 ||||| || || ||||| || ||||||||||||| || | | ||| | || Sbjct 817987 AGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGAC 818046 Query 147507 GTAAACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATG 147566 || ||||||||||||| || ||||| || ||||| ||||| || | ||||||||||| Sbjct 818047 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATC 818106 Query 147567 TAAGCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTCC 147626 || | || | |||||||| | ||||||| | || || | | ||| | |||| || Sbjct 818107 GGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCC 818166 Query 147627 CAGTTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAA 147686 |||||||| ||||| ||| || | | ||||||| || |||| || | || Sbjct 818167 CAGTTCCACAGATCCGTCGGTTCCT---TGTTCCACATCTCGTACTGCAAGATGCCCTTG 818223 Query 147687 CTTGCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTT 147746 || | || || || ||||| | ||||| | ||| | | || | || | | | Sbjct 818224 CTCACCGGACTGCCCTCGTACGTCTCGTACGGTCCATCTCGAGCGGCCAACTC-ACAGCT 818282 Query 147747 TGACTT--AGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCT 147804 | ||| || || || || || || ||||| | || | || ||||| | | ||||| Sbjct 818283 CG-CTTCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGTTGATTTAGCTTTTGAGCCT 818341 Query 147805 CTTGGCTGTCGTAGGGCATATC-CAAAATGGCGAACGTATCCGCAAGTCCTTGAATACCG 147863 ||| ||| ||||| || ||| | || | | ||||| ||| || | || || | ||| Sbjct 818342 CTTCGCTTTCGTACGG-ATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCG 818400 Query 147864 ATACCGATGGGTCGGTGTCTGAAATTCGA-TGCTTGAGCGCTAGCCAACGGATAAAAATT 147922 || ||||| || | ||| | | ||| || |||| ||| | || ||||| |||| Sbjct 818401 ATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTT-AGCCTCCGGCACGGGATAGTAATT 818459 Query 147923 CAAGTCGATAATTTTATTGAGATT 147946 | || || ||||| || ||||| Sbjct 818460 GACATCAATGATTTTGTTCAGATT 818483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478655136298080