Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq472 358 6e-94 seq250 170 2e-37 seq1104 134 1e-26 seq327 104 2e-17 >seq472 Length=2253382 Score = 358 bits (396), Expect = 6e-94 Identities = 1149/1760 (65%), Gaps = 42/1760 (2%) Strand=Plus/Plus Query 144740 GCTGGCTTGGTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCG 144799 || |||||||| |||| |||||||||||| ||||| | |||| ||| ||| Sbjct 817678 GCCGGCTTGGTACGCAGATAGTACATGCCAGTTTTCAATCCCATCTTCCAGCCATAGAAA 817737 Query 144800 TGTATCGACGTCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTT 144859 || |||||||||| | | || | |||||||| || | || | |||||| Sbjct 817738 TGGATCGACGTCAGCTTGCCATAGTTTGGCTCCGCGACGTGAATGTTGAACGATTGCGAC 817797 Query 144860 TGATCAATGAAAGCGTTGCGGTCGGCGGCCATCTCAATCATACGTTTGCATTTC-ATTTC 144918 ||||| || || ||| || || |||||||| | || |||||| || || || Sbjct 817798 TGATCGATAAACGCGCCACGATCTGCGGCCATTTTGATGC-ACGTTTTCACCGAGATCTC 817856 Query 144919 CCAAGCGGTCTTGTACAAACGTTTAATGTGGTCCGGAAT-GCCGTCAATCGCCTGAATCG 144977 ||| | || ||||||| ||| | | ||| || |||| ||||| || |||| Sbjct 817857 CCATACCGTTTTGTACAGGTCGCGAATTTCCTGCGGTATAGCCG-CAATCTTTTGGATCG 817915 Query 144978 ACCCCTTGTGCGCAAATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTGATCA 145037 | || |||| | | || ||||| ||| ||| |||| | ||| ||| Sbjct 817916 ATCCATTGTTGGACAGAATTTCGTTCTTCATGTCGAGATCCCACAGACCCATGTTGGTCA 817975 Query 145038 AGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAAT 145097 | || | | | | || || || ||||| |||||||| | || ||| || | | Sbjct 817976 AATCCTGCAGAAGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGT 818035 Query 145098 ACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTG 145157 | ||||| |||||| | || || || || || || ||||| || ||||| || || | | Sbjct 818036 AAACGTTCGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAG 818095 Query 145158 CGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCT 145217 | || ||||| |||| || | |||||||| | ||||||||| ||| | ||||| Sbjct 818096 CCGTCGGCATCGGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCT 818155 Query 145218 TTAGCGTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAA 145277 | | | |||| | ||| || ||||| | || |||||| ||||||||||| | Sbjct 818156 TCAACTCGGCCCAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGA 818215 Query 145278 TGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCC----CAAGTTTTGGCG 145333 |||||| ||| | || ||||| | | | ||| | | || | || ||| Sbjct 818216 TGCCCTTGCTCACCGGACTGCCCTCGTACGTCTCGTA-CGGTCCATCTCGAGC---GGCC 818271 Query 145334 AGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGC 145393 | ||| || ||||| ||||| |||||| | || || || ||| ||||| || ||| Sbjct 818272 AACTCACAGCTCGCTTCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGTTGATTTAGC 818331 Query 145394 AGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCC 145453 || || ||||| |||||||| ||||| ||| | || |||||||| | ||| Sbjct 818332 TTTTGAGCCTCTTCGCTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCC 818391 Query 145454 TGTATTCCCACGCCGATGGGCCGATGTTTCATGTTG-----CTCATCCTCGCCGACTCGA 145508 || | || | ||||| |||| || ||| ||| || | |||| || | || Sbjct 818392 TGCACGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTC--CGGCACG- 818448 Query 145509 TAGGATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGT 145568 ||||| ||| || || ||||| |||| || ||| ||| ||| | | | Sbjct 818449 --GGATAGTAATTGACATCAATGATTTTGTTCAGATTGCGCGTTACGGTCTTAGCGACTT 818506 Query 145569 GCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGA 145628 | || |||| |||||||| || | | ||| ||| | | || | ||||| Sbjct 818507 CCTTCAGCTTTGCAAAGTCATAC---GTTTTGTCTTGCTTTACAAACATGTTCAAGGCGA 818563 Query 145629 TCGACGCCAAATTACAAACTGCCGTCTCCTCGG-CGTCGCTGTATTGTACGATCTCGGCG 145687 |||| |||| ||| || || || ||| || || || ||| | || ||||| | | Sbjct 818564 TCGAGGCCAGATTGCATACCGCTACCTCATCCTTCGACGA-GTACTCCACAATCTCAGTG 818622 Query 145688 CACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCG 145747 ||||| ||| |||||||||||| || | ||| ||||| |||||||| | ||||| || Sbjct 818623 CACAAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCA 818682 Query 145748 TCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGT 145805 |||||||| |||||||||||| |||| || |||||||||| || | ||| |||| Sbjct 818683 TCCTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAAC--C 818740 Query 145806 GCAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGA 145865 || |||||||| ||||||| || |||| ||||||| ||||| | |||| | Sbjct 818741 ACAGATCCTGCGCCTTCACCTGCCGCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACA 818800 Query 145866 GCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCA 145925 ||| ||| ||| | || || || || || |||||||| | || || ||||||| Sbjct 818801 GCTTCTCGAACTCTTCGCCCCAGGTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCA 818860 Query 145926 GCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGT 145985 | ||| | |||| || | || |||| ||| |||| || || | ||| || |||| Sbjct 818861 GGCTCCACATTTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCAGAGTGCGT 818920 Query 145986 ACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACAC 146045 | | || ||| || || | ||||| || ||||| ||||| || || | || Sbjct 818921 AAAACATGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAG-AAAC 818979 Query 146046 T-ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTG 146101 | | || || | |||||||| || | ||||| ||||| ||||| || ||| Sbjct 818980 TCGAATATATCACCATGCCACGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTG 819039 Query 146102 CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCG 146161 |||||||| || |||| ||| || | ||||| ||||||||| ||| ||| | | ||| Sbjct 819040 CCACCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCG 819099 Query 146162 CTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTC 146221 | | || ||||||||| | || || || | ||| | || || || ||| Sbjct 819100 TTCGATATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGGATACAGTGCACGTTC 819159 Query 146222 ACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATG 146281 | |||| || ||| | |||| || || ||| || | ||||| ||||||||| Sbjct 819160 AGTCCGATGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATG 819219 Query 146282 CCGTCAATGCTATCGCTTCG--AATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCG 146339 || |||||||||| ||||| ||| | ||| ||||| || | | ||| | | Sbjct 819220 CCCTCAATGCTAT--CTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGACGCT 819277 Query 146340 GCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAA-CATTTTTCGGCTCATCATC 146398 |||| |||||| |||| || || ||||| ||||| | |||| || || Sbjct 819278 GCGTGGCCGCCGCAAACATAGTTGGCGAGGCGTGGGTAAAGTAACGCTCGG-ACAGCAGA 819336 Query 146399 CGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATG 146458 || || ||||| || | | ||||| |||||||| ||||| | ||| |||||||| Sbjct 819337 TTGTAGGTCTCGATCGCTGCATCGATGTCCTCGCCATGGATGCCAATAGCAACGCGCATC 819396 Query 146459 AGCATGTGTTGGGGCCGCTC 146478 |||||||| ||||| ||||| Sbjct 819397 AGCATGTGCTGGGGGCGCTC 819416 >seq250 Length=5469655 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| |||||||| | ||| | |||||||||||| || |||||||||||| | Sbjct 3557647 CCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 3557588 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | ||||||||| || || ||| Sbjct 3557587 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 3557528 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| ||| ||| | | ||| | ||||| | || ||||| Sbjct 3557527 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 3557468 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| ||||| || || ||||| ||||| |||||||| Sbjct 3557467 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 3557421 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||||| | ||| | |||||| ||||| ||||||||||| ||| Sbjct 4640794 CCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAG 4640853 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | ||||||||| || || || Sbjct 4640854 AGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 4640913 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | ||| | || || | | ||||| Sbjct 4640914 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACC 4640973 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || ||||| || ||||| ||||||||||||||| Sbjct 4640974 TCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 4641021 >seq1104 Length=7559990 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | ||| | ||||| ||||| || ||||| || || | Sbjct 5394127 CCACCACGCAGACGGAGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGAC 5394186 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| | ||||||||| || || ||| Sbjct 5394187 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGG 5394246 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| ||| ||| | | ||| | |||||| | | ||| | Sbjct 5394247 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATAGTATCCGATGGCTCAACT 5394306 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| |||||||| |||||||||||||| Sbjct 5394307 TCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5394353 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | ||| | ||||| ||||| || ||||| || || | Sbjct 5393671 CCACCACGCAGACGGAGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGAC 5393730 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || || |||| | ||||||||| || || ||| Sbjct 5393731 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGCGGG 5393790 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||| | | ||| | ||||||| | ||| | Sbjct 5393791 ATTCCCTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATCGTATCGGAAGGCTCAACT 5393850 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| |||||||| |||||||||||||| Sbjct 5393851 TCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5393897 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | ||| | ||| || ||||| || ||||| || || | Sbjct 5393899 CCACCACGCAGACGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCCGAC 5393958 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || |||||||| || ||| |||| | ||||||||| || || ||| Sbjct 5393959 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 5394018 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| ||| ||| | | ||| | ||||| | | ||| | Sbjct 5394019 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCAACC 5394078 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| |||||||| |||||||||||||| Sbjct 5394079 TCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5394125 >seq327 Length=13998812 Score = 104 bits (114), Expect = 2e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| ||| || || || || | |||||||||||| || |||||||| ||| Sbjct 3500929 GCCACCGCGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGA 3500870 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || ||| || |||||||| || ||| |||| ||||||||||| || ||||| Sbjct 3500869 CAGAGTACGTCCGTCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGG 3500810 Query 131127 GATTCCTTCTTT 131138 || || || || Sbjct 3500809 AATACCCTCCTT 3500798 Score = 104 bits (114), Expect = 2e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 131011 CCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATG 131070 ||||| ||| || || || || | || |||||||| || |||||||| ||| || | Sbjct 3501153 CCGCGAGGACGAAGAACCAAGTGAAGGGGTGACTCCTTCTGGATGTTGTAGTCGGACAAG 3501094 Query 131071 GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATT 131130 || || |||||| |||||||| || ||| |||| ||||||||||| || ||||| || Sbjct 3501093 GTACGTCCGTCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATA 3501034 Query 131131 CCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCG 131190 || || || || ||| || ||| | | ||| | || || | | ||||| || Sbjct 3501033 CCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCC 3500974 Query 131191 ACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 | || | ||| || || || || || || ||||| ||||||||| Sbjct 3500973 AGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATG 3500929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472005637205760