Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq505 170 1e-37 seq250 107 1e-18 seq1104 102 5e-17 seq801 98.7 7e-16 >seq505 Length=1729888 Score = 170 bits (188), Expect = 1e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| ||| ||||||| ||||| |||||| | ||| |||||||| ||||| ||||| Sbjct 686659 ATGGCTACCGTGAACGTGAATCGCAATGTGACCGACATCTTCTACCGGTACAAGATGCCC 686600 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 |||||| ||| ||||| ||||||||||||||||| || || || || || || |||||| Sbjct 686599 CGCATCAACGCGAAGGTAGAGGGTAAGGGAAACGGCATCAAGACGGTGATCGTGAACATG 686540 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 | || || || ||| |||| ||||| || |||||||||||||| || || || ||| Sbjct 686539 GCCGATGTGGCGCGCGCGATCGGCCGCCCGGCAACCTACCCGACGAAGTACTTTGGCTGC 686480 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 || || || ||||| ||||| ||||| || || Sbjct 686479 GAGCTGGGAGCTCAAACGCAATTTGACCATAA 686448 Score = 158 bits (174), Expect = 8e-34 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 ||||| |||||||| || ||||| ||||| | | ||||||||||||||| | || ||| Sbjct 686378 AACGAACGCTTCATTGTGAACGGTTCGCACGATGCAGCCAAGCTGCAGGACCTGCTCGAC 686319 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 || || || ||||||||||||||||| | ||| ||||| ||||||||||| || || || Sbjct 686318 GGGTTCATCCGCAAGTTTGTGCTGTGCCCGGAGTGCGACAACCCGGAGACGGACCTGATC 686259 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 || || |||||| || ||||| ||||||||||| |||||||| | ||| || | Sbjct 686258 GTCTCGTCCAAGAAGGGTACGATCTCGCAGGGCTGCAAGGCGTGCGGCTTCCACGGGCCG 686199 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 || || | ||||| | ||||| ||||| | ||||| || || Sbjct 686198 CTCGAGGTGAACCACAAGGTGAACACGTTCATCATCAAGAACCCGCC 686152 >seq250 Length=5469655 Score = 107 bits (118), Expect = 1e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 |||||||| | | |||| ||||| |||||| || ||||| ||||| ||||| || Sbjct 4640791 TTACCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCG 4640850 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || | | || | || || | || || ||||| || || || || || ||||| | | Sbjct 4640851 GAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGG 4640910 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | |||||| |||||| || ||| ||||||||||| || || || | || Sbjct 4640911 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCG 4640970 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || || | ||| || || || || || | ||||||||||| |||||||||||| Sbjct 4640971 ACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTTT 4641024 Score = 102 bits (112), Expect = 5e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || |||| ||||| |||||| || |||||| || || |||||||| || Sbjct 3557648 ACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGA 3557589 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || || | || || | || || ||||| || || || || || ||||| | || Sbjct 3557588 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 3557529 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || || || |||||| || || ||||||||||| || ||||| || || Sbjct 3557528 GATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 3557469 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | ||||| || |||||||| | |||||| ||||| |||||||| || Sbjct 3557468 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 3557418 >seq1104 Length=7559990 Score = 102 bits (112), Expect = 5e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38087 ATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATC 38146 ||| ||||| | || ||| | |||| ||||||||| ||||| || || || || || Sbjct 5393667 ATTTCCACCACGCAGACGGAGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTC 5393726 Query 38147 AGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 |||| || | || || | || ||||||||||| || || || || ||||| | Sbjct 5393727 CGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGG 5393786 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266 |||| || || |||||| || ||| ||||||||||| | ||||| | || Sbjct 5393787 CGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATCGTATCGGAAGGCTC 5393846 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| | || || || || || |||| ||||||||||| |||||||| Sbjct 5393847 AACTTCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5393897 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | |||| ||||||||| ||||| || || || || || | Sbjct 5394125 TACCACCACGCAGACGGAGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCG 5394184 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | || ||||| || || || || || || ||||| | | Sbjct 5394185 ACAGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCG 5394244 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || ||||||||||| | |||||| |||| Sbjct 5394245 GGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATAGTATCCGATGGCTCAA 5394304 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 |||| | || || || || || |||| ||||||||||| |||||||| ||||| Sbjct 5394305 CTTCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCATATTTTA 5394359 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | |||| |||||| ||| ||||| || || || || || | Sbjct 5393897 TACCACCACGCAGACGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCCG 5393956 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | || |||||||| || || || || || ||||| | | Sbjct 5393957 ACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCG 5394016 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || ||||||||||| || ||||| |||| Sbjct 5394017 GGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCAA 5394076 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||| ||||||||||| |||||||| Sbjct 5394077 CCTCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5394125 >seq801 Length=13554 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 12817 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGACTCAT 12758 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||| ||| Sbjct 12757 GGTGGTATTTAGCTTTA 12741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334942244246834