Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq472 232 6e-56 seq250 131 1e-25 seq1104 125 6e-24 >seq472 Length=2253382 Score = 232 bits (256), Expect = 6e-56 Identities = 949/1478 (64%), Gaps = 40/1478 (3%) Strand=Plus/Plus Query 128775 CGACTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACAT 128834 || ||||||||| ||||| | || || | | ||||||||||| |||| ||||||||| Sbjct 817644 CGTCTTGTCCACCGTAAACTGGATCGCATTTACGGCCGGCTTGGTACGCAGATAGTACAT 817703 Query 128835 GCCTGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGT 128894 ||| |||||||| || | ||||| | | || |||| |||| | | ||| | Sbjct 817704 GCCAGTTTTCAATCCCATCTTCCAGCCATAGAAATGGATCGACGTCAGCTTGCCATAGTT 817763 Query 128895 GGGTTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGC 128954 || | | ||| || || ||||| ||||| ||||| | ||| ||||| || Sbjct 817764 TGGCTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGATAAACGCGCCACGATCTGC 817823 Query 128955 AGCCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCAC 129014 ||||| || | ||||||| || ||||| ||||||||||| || || | | Sbjct 817824 GGCCATTTTGATGCACGTTTTCACCGAGATCTCCCATACCGTTTTGTACAGGTCGCGAAT 817883 Query 129015 GTGTTTTGGTATTTCTTCAATGTTCTGCA-CGCTGCCGTTGTTTGCAATAATTTTGTTTC 129073 | | ||||| | |||| || || | || | || ||||| | | ||||| ||| Sbjct 817884 TTCCTGCGGTATAGCCGCAATCTTTTGGATCGAT-CCATTGTTGGACAGAATTTCGTTCT 817942 Query 129074 GCATCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAG-TATTTGTTTATT 129132 ||| | | ||| | || ||| ||||||| | | ||| | | ||| | Sbjct 817943 TCATGTCGAGATCCCACAGACCCATGTTGGTCAAATCCT-GCAGAAGATGATGGTTCACC 818001 Query 129133 ACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAAC 129192 || || || || |||| || ||||||| | ||||| ||| ||| ||||||| ||| Sbjct 818002 ACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGGCTCGAAC 818061 Query 129193 GATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGC 129252 |||||||||||||| | ||||| ||||| | || || ||||| |||| ||| Sbjct 818062 GATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAACAGCAGC 818121 Query 129253 GAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGAT 129312 || || || | ||||||| || | || || || | | ||||| ||||| ||| Sbjct 818122 GAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCACA--GAT 818179 Query 129313 --GTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAA 129370 || ||| | ||||||| ||||| ||||| || ||| || | |||||| Sbjct 818180 CCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTCACCGGACTGCCCT 818239 Query 129371 AGTAGGAATCGTGCACGCCGTA---AGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGC 129427 ||| | |||| | || | ||| ||||| || || |||||||||| |||| Sbjct 818240 CGTACGTCTCGTACGGTCCATCTCGAGCG---GCCAACTCACAGCTCGCTTCCAGCGCGC 818296 Query 129428 CAAAATAAATTGTTTCGGCAAT-TTTGGTGTTCAACACTTTG-GCCTGGTCGCTTTCGTA 129485 | | || || |||||| ||| |||| || | | |||| |||| ||||||||||| Sbjct 818297 CGTAGTAGATGGTTTCG--AATATTTGTTGATTTAGCTTTTGAGCCTCTTCGCTTTCGTA 818354 Query 129486 CGGCATA-CGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTC 129544 ||| ||| |||| || | || | ||||||| || || | || | ||||| || | Sbjct 818355 CGG-ATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCGATCCCGATCGGCC 818413 Query 129545 GATGTTTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTT 129604 || ||||||| | ||| | || ||||||||| |||| || || |||| Sbjct 818414 TGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCAATGATTT 818473 Query 129605 TGTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTAC---T 129661 |||| | ||| || | || | || | || | | || |||| | ||| | Sbjct 818474 TGTTCAGATTGCGCGTTACGGTCTTAGCGACTTCCTTCAGCTTTGCAAAGTCATACGTTT 818533 Query 129662 CGCCTACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCAC 129721 | || | | | ||||| || | |||||||||| |||||| || || Sbjct 818534 TGTCTT----GCTTT--ACAAACATGTTCAAGGCGATCGAGGCCAGATTGCATACCGCTA 818587 Query 129722 TTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGC 129781 || | || |||||| ||||| || | |||||| || | ||| ||||||| Sbjct 818588 CCTCATCCTTCGACGAGTACTCCACAATCTCAGTGCACAAGTTGGAACATTTGATGGTGC 818647 Query 129782 CCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGC 129841 | | || || || |||||||| ||||||||||| ||||||| ||||||||| || Sbjct 818648 CGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGC 818707 Query 129842 CCGTTTCGACTTGCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGATCTGTCTTA 129901 | ||||| || |||| ||||| || | ||| || | ||||| | ||| | | Sbjct 818708 CGGTTTCCACCTGCGATTCGATGATCGCAAACCACAGATCCTGCGCCTTCACCTGCCGCA 818767 Query 129902 CAAATTTGCCACATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCC----GTGT 129957 ||| || ||||||||| || ||||| | || || ||| ||| |||| Sbjct 818768 TAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCCCCAGGTGT 818827 Query 129958 ACGGTGTCGAGCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCG 130017 || | ||| || | || |||| ||||||| ||||||||| | | ||| || Sbjct 818828 CCGAT----AGCCCGGGACAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCCTCC 818883 Query 130018 ACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTA 130077 || || | ||| |||| || |||| ||| || ||||| |||| || || || Sbjct 818884 ACACGCTGCATGAACAGGTCCGGTATCCAGAGTGCGTAAAACATGTCCCGTGCGCGGACC 818943 Query 130078 TCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGT 130137 ||||| || |||| ||||| || || || ||| | || || | |||||||| Sbjct 818944 TCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATATATCACCATGCCACGGC 819003 Query 130138 TCAACATAAATTGCCATTGCGCCCTTCCG---TTTGCCCCCTTGGTCAACGTGGCGCACG 130194 || | ||| || || | ||| || ||| ||||| || || || |||| || | Sbjct 819004 TCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCC 819063 Query 130195 GCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTT 130232 | |||||||||||| |||| ||| | | ||| ||||| Sbjct 819064 GTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTT 819101 >seq250 Length=5469655 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| ||||| || ||||| | ||||| || || |||| ||||| || || | Sbjct 4641024 AAACATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCC 4640965 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | || || | || ||| || || |||||||| || ||||| || || Sbjct 4640964 TTCGGACACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 4640905 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| || ||||| || || |||||||| ||| | |||||| ||||| ||||||| || Sbjct 4640904 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTA 4640845 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||| || ||||| ||| | ||| | || ||||| | || || ||| Sbjct 4640844 CAACATTCAGAAGGAATCGACCCTTCATCTGGTGCTGCGACTCCGTGGTGGT 4640793 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || ||||| | || ||||| || | || ||||| || || || Sbjct 3557418 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 3557477 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || || || || ||||||||||| || || || ||| Sbjct 3557478 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGAT 3557537 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | |||||| |||||| | ||||||||| Sbjct 3557538 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTAC 3557597 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || ||| | ||| | || |||| ||||||| ||| Sbjct 3557598 AACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGCCTGCGCGGTGGT 3557648 >seq1104 Length=7559990 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||| | ||||| || || |||| || ||||| || | || Sbjct 5393897 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCC 5393838 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||| || || ||||||||||| || || || ||||| Sbjct 5393837 GATACGATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 5393778 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || |||||||| || ||| | |||||| ||||||| | || || || ||| Sbjct 5393777 CAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAAC 5393718 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||| || | ||| | ||| | || |||| || || Sbjct 5393717 ATCCAGAAGGAATCGACTCTTCATCTGGTTCTCCGTCTGCGTGGTGG 5393671 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||| | ||||| || || ||||||| || || || | | Sbjct 5394125 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACTCTGGAGGTTGAGCCATCG 5394066 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || || || ||||||||||| || || || ||||| Sbjct 5394065 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 5394006 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || ||| | || ||| ||||||| | || || || ||| Sbjct 5394005 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAAC 5393946 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||||||| | ||| | ||| | || |||| || ||| Sbjct 5393945 ATCCAGAAGGAATCCACCCTTCATCTGGTTCTCCGTCTGCGTGGTGGT 5393898 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| ||||| || |||||| | ||||| || || ||||||| ||||| || | Sbjct 5394357 AAATATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACTCTGGAAGTTGAGCC 5394298 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | ||||| | || || | || || || || ||||||||||| || || || || Sbjct 5394297 ATCGGATACTATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGA 5394238 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| || ||||| || || || || || ||| | |||||| ||||||| | || || || Sbjct 5394237 TCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTA 5394178 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || ||||| || | ||| | ||| | || |||| || ||| Sbjct 5394177 TAACATCCAGAAGGAATCGACTCTTCATCTGGTTCTCCGTCTGCGTGGTGGT 5394126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419721789861910