Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq328 190 4e-43 seq250 158 2e-33 seq1104 143 5e-29 seq2 89.7 9e-13 >seq328 Length=4755327 Score = 190 bits (210), Expect = 4e-43 Identities = 366/537 (68%), Gaps = 2/537 (0%) Strand=Plus/Minus Query 268258 CCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCC 268317 |||||| || ||||| |||||| ||| |||||||| |||||||| | ||| | || || Sbjct 877848 CCACATCGCCTCGACGTAGTCCTTCGCGTGGCCCCAGTCGCGCTTCGAGTCGAGATTGCC 877789 Query 268318 GAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCG 268377 || |||| | | ||||| ||||||| | || | ||| |||||||| || Sbjct 877788 CAGCTCCAGGTACTCCTGCTGGCCGAGCGAAATCTTGGCCACCGAGCGGGTGATTTTGCG 877729 Query 268378 GGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGC 268437 |||||||| |||| || || | || |||||| ||||| |||||||||||||| || Sbjct 877728 CGTCACGAAGTTCTCCCCCCGGCGCGGCGACTCGTGATTGAACAGGATGCCGTTGCAGGC 877669 Query 268438 GAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAAC 268497 ||||||| | || || || || ||||| | || ||||||| | ||||||| ||| Sbjct 877668 GAACATGTCGTACGCTTCGCGATAGTTGATCACAATCCAGTACCCGTACATCTTGGCACA 877609 Query 268498 TGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTT 268557 |||||||| || || |||| ||| || ||| | || || || | || || || Sbjct 877608 CGCGTACGGCGAGCGGGGATAGAACGGGGTCTTTTCGTTCTGGGGCGTCTCCGCCACCTT 877549 Query 268558 GCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGAT 268617 ||| | |||||||| |||||||| |||||||| || || | || | Sbjct 877548 GCCGTACAGCTCGGACGTCGATGCCTGGTAGAAGCGGACCGTCCGCTCCTGTCCCACCGT 877489 Query 268618 TCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGG 268677 ||||| || ||||||| || || || || | | ||||| ||||| || ||||| Sbjct 877488 ACGGATGGCGTCGAGCAGCCGCAGCGTACCGACCGCGTCCACCTCCGCCGTGTACTCGCT 877429 Query 268678 CATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTT 268737 || ||||| || | || || |||||||||||| | || || || | || ||| Sbjct 877428 CAGATCGAACGAAATCTTCACGTGGCTCTGGGCGGCTAGATTGTATATTTCGGACGGGCG 877369 Query 268738 GACCTGCTGCACGATCTTCACGAGGTTCGTTG-AGTCGGTGAGGTCTCCGTAGTGCA 268793 ||||| | ||| ||||| | | || || |||||| | ||| |||||||||| Sbjct 877368 CACCTGGGCAATGATTTTCACCA-GCGCGCTGCTGTCGGTCATGTCACCGTAGTGCA 877313 >seq250 Length=5469655 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||| || || || ||||| || |||||||| |||||||| Sbjct 3557647 CCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 3557588 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || || || || || Sbjct 3557587 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 3557528 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||| || |||||| || || | | || || Sbjct 3557527 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 3557468 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || ||||||||||| |||||||| |||||||| Sbjct 3557467 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 3557421 Score = 150 bits (166), Expect = 3e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 || || || || || || |||| |||| || || || || || || || ||||| || Sbjct 4640788 TACTTACCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAG 4640847 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 |||||||| || | ||||| || | |||||| |||||||| || || | || || || Sbjct 4640848 TCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCT 4640907 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || ||||||||||||||||| || ||||||||||| || |||||| ||||| | | Sbjct 4640908 GGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGC 4640967 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | |||||||| || || ||||| || || ||||| |||||||| Sbjct 4640968 TCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 4641020 >seq1104 Length=7559990 Score = 143 bits (158), Expect = 5e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||||||||| || || || || | |||| || || || || || || ||||||||||| Sbjct 5393664 TTAATTTCCACCACGCAGACGGAGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATA 5393723 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 || || || || | ||||| || | |||||| ||||| || || || | || || || Sbjct 5393724 GTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATC 5393783 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 || || || || |||||||| || ||||||||||| || ||| || || || | | Sbjct 5393784 TGGCGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATCGTATCGGAAGG 5393843 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||| ||||||||| ||||| || || || || ||||| |||||||| Sbjct 5393844 CTCAACTTCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5393897 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| || || ||||| || || ||||||||||| || || Sbjct 5393899 CCACCACGCAGACGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCCGAC 5393958 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| || || | || || || || || Sbjct 5393959 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 5394018 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||| || |||||| || || | || || || Sbjct 5394019 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCAACC 5394078 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| ||||| || || || || ||||| |||||||| Sbjct 5394079 TCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5394125 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| || || || || || || ||||||||||| || || Sbjct 5394127 CCACCACGCAGACGGAGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGAC 5394186 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | || || || || || Sbjct 5394187 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGG 5394246 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||| || ||| || || || | || || ||| Sbjct 5394247 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATAGTATCCGATGGCTCAACT 5394306 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| ||||| || || || || ||||| |||||||| Sbjct 5394307 TCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5394353 >seq2 Length=6617244 Score = 89.7 bits (98), Expect = 9e-13 Identities = 112/151 (74%), Gaps = 6/151 (4%) Strand=Plus/Plus Query 196592 ACGGAAACATTTGCGATGGGCGTCAACGGGCCTGCGAGGACCGTCGTCTTCGA--GT-CG 196648 ||||| || |||||||||||||| ||| ||| ||| | |||||| |||| || || || Sbjct 1698692 ACGGAGACGTTTGCGATGGGCGTTAACATGCCCGCGCGCACCGTCATCTTTGACAGTACG 1698751 Query 196649 CTCGAGAAGTTCGATGGACACGAGCGCCGCATGTTCCAGCCGCACGAGTTCATCCAAATG 196708 | | ||||||||||| || | | ||| | | || ||| ||||| || || ||| Sbjct 1698752 CGC---AAGTTCGATGGGCAGGCGTTCCGGCCGCTGCAACCGTCCGAGTACACGCAGATG 1698808 Query 196709 GCGGGCCGGGCCGGGCGCCGAGGGTTTGACA 196739 ||||||||||||||||| || || | |||| Sbjct 1698809 GCGGGCCGGGCCGGGCGGCGCGGTCTCGACA 1698839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921608414380080