Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq549 87.8 4e-14 >seq549 Length=10034839 Score = 87.8 bits (96), Expect = 4e-14 Identities = 220/332 (66%), Gaps = 7/332 (2%) Strand=Plus/Minus Query 3198 CTGCGAGCTGCTAAACTTTGTCAACGTTGTCGCACAGATATGCTTCATGAATGCCTTTAT 3257 ||||||| |||| |||||||||||||| ||| ||||| | ||| ||| | || | Sbjct 5394795 CTGCGAGGTGCTGAACTTTGTCAACGTGCTCGGCCAGATCTACTTTATGGACTTTTTCCT 5394736 Query 3258 AGGCGAAGACTTTTTGTTGTACGGAATCTATGTTACCTTCTTCAACCAG--GAAGCCGCC 3315 | || || || | |||||| | | |||| ||||| | || | ||||| Sbjct 5394735 CGACGGCGAGTTCTCCACGTACGGCAGCGATGTGGTGCGCTTCACCGAGATGGAGCCGGA 5394676 Query 3316 CATCCGAACATGACGAACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTT 3375 || | | ||| ||| ||| ||| ||||| || | | || ||||| || Sbjct 5394675 G----GAGCGCGGCGA-CCCGATGGCGCGCGTCTTCCCGAAGGTGACCAAGTGTACCTTC 5394621 Query 3376 CACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAG 3435 ||||| ||||| || || ||| || | || | ||| || || ||| | || ||| Sbjct 5394620 CACAAGTACGGACCGTCCGGCAGTGTGCAGAAATTCGACGGTCTGTGCGTGCTGCCGCTC 5394561 Query 3436 AACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTGCTAGCCATC 3495 ||| | || ||||||||||||||| | ||||| |||||||||||| | |||| ||||| Sbjct 5394560 AACATCGTGAACGAGAAGATCTACGTGTTCCTGTGGTTCTGGTTCATCCTGCTCACCATC 5394501 Query 3496 ATCAGCGGTATCGTTGTTCTGTACCGCATTGC 3527 | | || ||| | |||||||| |||| Sbjct 5394500 CTGACTGGCATCTCGCTGATGTACCGCTTTGC 5394469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479834289000