Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq472 322 9e-83 seq328 226 5e-54 >seq472 Length=2253382 Score = 322 bits (356), Expect = 9e-83 Identities = 941/1428 (66%), Gaps = 66/1428 (5%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 |||||||||||| ||||| |||||||||||||| | | ||| | ||| || ||| Sbjct 817995 GTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGG 818054 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||||||| || || || |||||| || |||||||| || | || Sbjct 818055 CTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAA 818114 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 |||||| || | | ||||||| | ||| | | |||| ||||| ||| Sbjct 818115 CAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCA 818174 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 || ||| | |||| | || |||||| || |||||| | |||||||| Sbjct 818175 CAGATCCGTCGGTTCCTTG---TT------CCACATCTCGTACTGCAAGATGCCCTTGCT 818225 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC 244389 || || ||||||||||| ||| ||| || || || || ||||| || ||||||| | Sbjct 818226 CACCGGACTGCCCTCGTACGTCTCGTACGGTCCATCTCGAGCGGCCAACTCACAGCTCGC 818285 Query 244390 GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC----GGGCCT 244445 || || ||| ||||||||||||| ||||| || ||||| || | || | |||| Sbjct 818286 TTCCAGCGCGCCGTAGTAGATGGTTTCGAATAT----TTGTTGATTTAGCTTTTGAGCCT 818341 Query 244446 TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 ||| | | || || ||||| ||||| | ||||||| ||||||||||||| Sbjct 818342 CTTCGCTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCGA 818401 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGC 244565 | ||||| || ||||| ||| | ||||||||| | || || |||||||| || | ||| Sbjct 818402 TCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGA 818461 Query 244566 CGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAA 244625 | || || | ||||| || ||||| || | | |||| || |||| || Sbjct 818462 CATCAATGATTTTGTTCAGATTGCGCGTTACGGTCTTAGCGACTTCCTTCAGCTTTGCAA 818521 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685 |||| ||| | | || | | | |||||| ||| | ||||| Sbjct 818522 AGTCATACGTTTTG---TCTT------------GCTTTACAAACATGTTCAAGGCGATCG 818566 Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745 |||||| ||||| || || ||||| ||| | ||||| |||||||| ||||| | Sbjct 818567 AGGCCAGATTGCATACCGCTACCTCATCCTTCGACGAGTACTCCACAATCTCAGTGCACA 818626 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGAC-TTGGCG-TTGCAGGCGTC 244803 ||| || ||||||||||| | | ||| || || || || || ||||| || || Sbjct 818627 AGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTT--ACTTTTACGATTGCAAGCATC 818684 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGA 244862 |||||| |||||| | || | ||||| || | ||| | ||| || ||| ||| | Sbjct 818685 CTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGC-AAACCACA 818743 Query 244863 GGTCCCTAGCCTTGACCGTCCTGC---GAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACA 244919 | ||| ||||| ||| | | || ||| |||||| |||||| | ||||||| Sbjct 818744 GATCCTGCGCCTTCACC-TGCCGCATAAAGC--GACCCTCTTTCTCGTACCCCGTGTACA 818800 Query 244920 GGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGA 244979 | ||||||||| ||||||| || ||| ||||| || ||||||||| | Sbjct 818801 GCTTCTCGAACTCTTCGCCCCAGGTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCA 818860 Query 244980 GACTCCAC---TCG-CCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGG 245035 | |||||| ||| |||| ||| || | ||||||||| ||||| || |||||||| Sbjct 818861 GGCTCCACATTTCGTTCGCC-TCC---ACACGCTGCATGAACAGGTCCGGTATCCAGAGT 818916 Query 245036 GCCTGGAAGAGGTCCCTGGTCCTCTG--CTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCA 245093 || | || | ||||| || | | | ||| ||| ||| ||||| ||| |||| || | Sbjct 818917 GCGTAAAACATGTCCC--GTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGA 818974 Query 245094 AAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153 ||| || || | || | ||||| ||||| | |||| |||| || || ||||||| Sbjct 818975 GAAACTCGAATATATCACCATGCCACGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCT 819034 Query 245154 TGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTA 245213 ||||||| ||||| || || || | |||| ||| |||||| | ||||| | Sbjct 819035 TGTTGCCACCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCA 819094 Query 245214 TGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGA 245273 ||||| || ||||| || || |||||| | ||||| | | || | | Sbjct 819095 GACCGTTCGATATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGGATACAGTGCA 819154 Query 245274 TGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTG 245333 | || || | || ||||| ||| || || ||||| || ||| | ||||| Sbjct 819155 CGTTCAGTCCGATGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGT 819214 Query 245334 CTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG--- 245390 |||||||| ||||| || |||| | | ||| |||||||| || ||||||| Sbjct 819215 AGATGCCCTCAATGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGAC 819274 Query 245391 GCT-TGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GA 245448 ||| | ||| || || |||| ||| || ||||||||||||||| | |||| || Sbjct 819275 GCTGCGTGGCCGC-CG---CAAACATAGTTGGCGAGGCGTGGGTAAAGTAAC-GCTCGGA 819329 Query 245449 GAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT 245496 || | ||| |||| || | || ||||||| ||||| ||||| Sbjct 819330 CAGCAGATTGTAGGTCTCGATCGCTGCATCGATGTCCTCGCCATGGAT 819377 >seq328 Length=4755327 Score = 226 bits (250), Expect = 5e-54 Identities = 304/417 (73%), Gaps = 11/417 (3%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| ||||| || ||| |||| ||| | ||| ||||||||| |||||||| ||| Sbjct 1649208 CTGTTCAATGCCATCGAAACGCTGCCGTGCGTGAAGCGGAAGGCGGATTGGGCGCTGAAC 1649267 Query 42669 TGGATCGAGAGTCCCGACG--CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCG 42726 |||||| ||| | || | |||| || |||||| || | || || || | || || | Sbjct 1649268 TGGATCTCGAG-CAAGAAGGCCAACTTT-GGCGAGCGGGTCGTGGCTTTCGCTGCGGTTG 1649325 Query 42727 AGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-- 42784 |||| ||||||||| || ||||||| | ||||||||||| ||| || ||| | Sbjct 1649326 AGGGTATCTTCTTCAGCGGTAGCTTCGCCGCGATCTTCTGGCTGAAGAAG--CGTGGCCT 1649383 Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGA 42844 |||||| |||||||||||||||||||| || ||| | ||||| |||||||| | || Sbjct 1649384 GATGCCGGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGACGAAGGGCTGCACTGCGA 1649443 Query 42845 CTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCG 42904 |||||||||||| ||||| | | || ||| ||||| ||||||||||| || Sbjct 1649444 CTTTGCCTGCCTGATGTTC---AAGTATCTGGTGCAGAAGCCGTCGAAGGAGCGCGTGAC 1649500 Query 42905 GGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGT 42964 || |||||| || || || ||||||| |||||||||| ||| || | ||||| || Sbjct 1649501 GGAGATCATCCGCGATGCGGTCCTGATCGAGCAGGAGTTCCTGACGAAGGCACTGCCGGT 1649560 Query 42965 GTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 | || | ||||||||| || || |||| ||||||| ||| || ||||| Sbjct 1649561 GGATATGCTGGGCATGAACTGTGATCTGATGTCGCAGTACATTGAGTTTGTGGCCGA 1649617 Score = 123 bits (136), Expect = 5e-23 Identities = 184/257 (72%), Gaps = 12/257 (5%) Strand=Plus/Plus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGT--CT 42392 |||||| | || ||| |||| ||| ||||||||| | | ||||||||| ||| | Sbjct 1648829 CTGGACGGTGGAAGAGGTTGATCTGTCCAAGGACATGAAGGACTGGGAGTCGCTGAAACC 1648888 Query 42393 GAG--AACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCA 42450 ||| |||| | | || | || | | ||||||||||| ||||| || ||||| | Sbjct 1648889 GAGCGAACGCCACTTCATTTCCCA----CGTGCTGGCCTTCTTTGCCGCGTCCGACGGTA 1648944 Query 42451 TAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCG 42508 | || || ||||| |||| | |||| | ||||||||| ||| |||||||| Sbjct 1648945 TCGTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGTTAC--GGAGGCGCG 1649002 Query 42509 CTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACT 42568 ||||||||||||||||||||| || || || || |||||| ||| ||||| | || Sbjct 1649003 CTGCTTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGCGAGATGTACTCGCTGCT 1649062 Query 42569 GCTCAACACGTACATCC 42585 | || |||||||||||| Sbjct 1649063 GATCGACACGTACATCC 1649079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944324869652640