Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02]
1,214 sequences; 246,567,867 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq272 111 1e-19
seq250 96.9 3e-15
seq1104 84.2 2e-11
>seq272
Length=5604218
Score = 111 bits (122), Expect = 1e-19
Identities = 212/306 (69%), Gaps = 10/306 (3%)
Strand=Plus/Minus
Query 37807 AGGTGTTTGAAAACGCCGACACGCA---CGATCTCTTGTGGAACGCGGCTCAAATTCAGC 37863
||| ||| || | ||| | ||||| |||||| ||||||| |||| || | |||
Sbjct 4889144 AGGAGTTGGAGACGGCCAAAACGCATGACGATCT---GTGGAACTCGGCCCAGCTGCAGA 4889088
Query 37864 TTGTGCGCGAGGGTAAGATGCATCAGTATATGCGCATGTATTGGTGCAAGAAAATTTTGG 37923
| ||| ||||| |||||||| | |||||||||| ||| ||| || ||| |||
Sbjct 4889087 TGGTGAAGGAGGGCAAGATGCACGGCTTCCTGCGCATGTACTGGGCCAAAAAGATTCTGG 4889028
Query 37924 AATGGTCTGATGATGCTC-AGACCGCGCTCAACTACGCCATTTATCTCAATGATAAGTAC 37982
| ||| | || | || | || ||||| | || || ||||| || ||| |||
Sbjct 4889027 AGTGGAC-GAAAACGCCCGAGGAAGCGCTTGAGACGGCGATCTATCTGAACGATCGCTAC 4888969
Query 37983 AGCTTGGACGGGCGTGATCCCAACGGTTACGTCGGCTGTTTGTGGTCTATATGCGGGC-T 38041
|| |||| ||||| ||||| ||||| |||||||| || ||||||| || |||||| |
Sbjct 4888968 AGTCTGGATGGGCGCGATCCGAACGGGTACGTCGGTTGCATGTGGTCGATC-GCGGGCAT 4888910
Query 38042 ACACGATAGAGCCTGGCGCGAGATTCCCATTTACGGCAAGATTCGGTACATGAACTACAA 38101
|||||| | |||| ||| || | ||||| ||||||||||||||||| |
Sbjct 4888909 CCACGATCAGGGCTGGAAGGAGCGCGAAATCTTTGGCAAAATTCGGTACATGAACTATGA 4888850
Query 38102 CGGATG 38107
||||||
Sbjct 4888849 CGGATG 4888844
>seq250
Length=5469655
Score = 96.9 bits (106), Expect = 3e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || | ||| ||||||||||||||||| || ||||||||| ||||||||||| |
Sbjct 3557648 ACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGA 3557589
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
|| || | || |||| ||||||||||| || ||||| ||||||||||| |||
Sbjct 3557588 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 3557529
Query 34020 CACGCTCTCTTTGTCC 34035
| | ||| ||||||
Sbjct 3557528 GATTCCCTCCTTGTCC 3557513
Score = 87.8 bits (96), Expect = 1e-12
Identities = 157/224 (70%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968
|| ||||||||||||||||| || ||||||||||||||||| || | | | || ||
Sbjct 4640803 AGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTG-CG 4640861
Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028
| || |||| ||||||||||| || ||||| ||||||||||| || | || ||
Sbjct 4640862 ACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTC 4640921
Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCG 34087
|||||| || ||| ||| | ||| | | || | || ||| || | |
Sbjct 4640922 CTTGTCCTGGATCTTTGCCTTCA-CATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTG 4640980
Query 34088 TTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131
| || || || ||||| ||||||||||| || || ||||| |||
Sbjct 4640981 TGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTTT 4641024
>seq1104
Length=7559990
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || || ||||||||||| || |||||||| ||||| || || | |
Sbjct 5393671 CCACCACGCAGACGGAGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGAC 5393730
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
| || | || |||| ||||| |||||||| ||||| ||||||||||| |||
Sbjct 5393731 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGCGGG 5393790
Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCA 34079
| | ||| |||||| || ||| ||| | |||| | |||| | || ||
Sbjct 5393791 ATTCCCTCCTTGTCCTGGATCTTTGCCTTCA-CATTCTCAATCGTATCGGAAGGCTCAAC 5393849
Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
||| | || || || |||||||| || |||||||| || || |||||
Sbjct 5393850 TTCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5393897
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397056525213628
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |