Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq316 100 3e-16 seq327 95.1 1e-14 seq1104 93.3 5e-14 seq527 91.5 2e-13 seq438 91.5 2e-13 seq549 87.8 2e-12 seq771 86.0 7e-12 >seq316 Length=4724671 Score = 100 bits (110), Expect = 3e-16 Identities = 87/107 (81%), Gaps = 6/107 (6%) Strand=Plus/Plus Query 56978 ACAACAAATTA-ACGTTTATGAAA-----AATTTTCTCCTCGGCAAGAAATCGAACCCTG 57031 |||||||||| | ||||| ||| |||||||||| || | | |||||||||| | Sbjct 4346766 ACAACAAATTCTATATTTATAAAATAAACAATTTTCTCCCCGACGGGGAATCGAACCCCG 4346825 Query 57032 GTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||||||||||||| ||||| |||||||||||| |||||| Sbjct 4346826 GTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTATCGAGGA 4346872 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/94 (84%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059 |||| |||||| || | | |||||||||| ||||||||||||||||||||| ||||| Sbjct 4348563 AAATATTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTG 4348622 Query 57060 ACCACTATACTACCGAGGAT-TGAAT--ATATAA 57090 |||||||||||| ||||||| | ||| |||||| Sbjct 4348623 ACCACTATACTATCGAGGATGTTAATCAATATAA 4348656 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 56994 TATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 ||||||| | | |||| || | | |||||||||| ||||||||||||||||||||| Sbjct 4335683 TATGAAATTTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 4335742 Query 57054 ATACTCACCACTATACTACCGAGGAT 57079 ||||| |||||||||||| ||||||| Sbjct 4335743 ATACTGACCACTATACTATCGAGGAT 4335768 >seq327 Length=13998812 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || ||||||||||| ||||| Sbjct 3501121 CTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCCTCCAGCTGCTTACCGGCGAA 3501062 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | |||||||| || | || | | |||||| ||| ||| || || | | Sbjct 3501061 GATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTATCCTGGATCTTGGCCTTCACGTT 3501002 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| || || || || | ||||||||| ||||| || |||||||| || Sbjct 3501001 CTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 3500942 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 3500941 GAAGATCTGCAT 3500930 >seq1104 Length=7559990 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAA---GAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||||| ||||||||| | | | |||||||||| ||||||||||||||||||||| | Sbjct 6295467 AAAAAATTTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 6295526 Query 57055 TACTCACCACTATACTACCGAGGAT 57079 |||| |||||||||||| ||||||| Sbjct 6295527 TACTGACCACTATACTATCGAGGAT 6295551 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 56998 AAAAAT-TTTCTCCTCGGCAA---GAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 |||||| ||||||||| | | | |||||||||| ||||||||||||||||||||| Sbjct 6295777 AAAAATATTTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 6295718 Query 57054 ATACTCACCACTATACTACCGAGGAT 57079 ||||| |||||||||||| ||||||| Sbjct 6295717 ATACTGACCACTATACTATCGAGGAT 6295692 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4335423 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 4335364 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 4335363 ATACTATCGAGGA 4335351 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 6296215 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 6296156 Query 57067 TACTACCGAGGA-TTGAA 57083 ||||| |||||| ||||| Sbjct 6296155 TACTATCGAGGACTTGAA 6296138 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 7149299 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 7149358 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 7149359 TACTATCGAGGA 7149370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/167 (72%), Gaps = 8/167 (5%) Strand=Plus/Plus Query 42046 TCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGC 42105 |||| ||||||| ||||| ||||| || || |||| ||||||||| || | || | || Sbjct 5397063 TCCGACCGTCATCGAGCTGTTTACCGGCAAAGATGATTCGCTGCTGATCCGGTGCAATGC 5397122 Query 42106 --TCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCT--CGATTCCACA 42161 || | |||| || ||||| ||| | | ||||| || |||| |||| Sbjct 5397123 CTTCACGTTGTTCA--ATTTTGCTTTTAATGTCCAAAACCGTTTCCGAAGCGAT--CACA 5397178 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| ||||| || |||||||||||||||||||| ||||| Sbjct 5397179 TCGAGGGTGATCGTTTTCCCGGTTAGCGTCTTTACAAAGATCTGCAT 5397225 >seq527 Length=1652681 Score = 91.5 bits (100), Expect = 2e-13 Identities = 78/94 (83%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1515719 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 1515778 Query 57066 ATACTACCGAGGA--TTGAATATATAACTTGAAT 57097 |||||| |||||| |||| ||| ||| || ||| Sbjct 1515779 ATACTATCGAGGAAGTTGATTAT-TAATTTAAAT 1515811 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 1517320 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 1517379 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 1517380 TATACTATCGAGGA 1517393 Score = 89.7 bits (98), Expect = 6e-13 Identities = 71/84 (85%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059 ||||| |||| || | | |||||||||| ||||||||||||||||||||| ||||| Sbjct 1518217 AAATTCCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTG 1518276 Query 57060 ACCACTATACTACCGAGG-ATTGA 57082 |||||||||||| ||||| ||||| Sbjct 1518277 ACCACTATACTATCGAGGAATTGA 1518300 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/94 (82%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 56993 TTATGAAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 |||| |||| | || ||| || | | |||||||||| ||||||||||||||||||||| Sbjct 1514615 TTATAAAAATCTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 1514674 Query 57052 ACATACTCACCACTATACTACCGAGGA--TTGAA 57083 ||||| |||||||||||| |||||| ||||| Sbjct 1514675 GGATACTGACCACTATACTATCGAGGACGTTGAA 1514708 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 1513725 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 1513784 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 1513785 CTATACTATCGAGGA 1513799 >seq438 Length=11078434 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||| |||||| ||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 4956334 AAAGATTTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 4956275 Query 57057 CTCACCACTATACTACCGAGGA 57078 || |||||||||||| |||||| Sbjct 4956274 CTGACCACTATACTATCGAGGA 4956253 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 56998 AAAAATTT-TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||| |||| ||||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 5132077 AAAGATTTCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 5132136 Query 57057 CTCACCACTATACTACCGAGGA 57078 || |||||||||||| |||||| Sbjct 5132137 CTGACCACTATACTATCGAGGA 5132158 >seq549 Length=10034839 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 8740944 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 8740885 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 8740884 ATACTATCGAGGA 8740872 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 5929525 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 5929584 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 5929585 TACTATCGAGGA 5929596 >seq771 Length=9217108 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 4941425 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 4941484 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 4941485 TACTATCGAGGA 4941496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543204556745760