Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq250 132 5e-26 seq472 120 3e-22 >seq250 Length=5469655 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||||| ||||||| |||||||| || ||||||||||| || | Sbjct 4640793 ACCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGA 4640852 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | || || |||||||||||||| | || || |||||||| || || || Sbjct 4640853 GAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 4640912 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || || ||| ||| ||| ||| | || || | || || Sbjct 4640913 AATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGAC 4640972 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||||||||| | ||||| |||||||| ||||| || Sbjct 4640973 CTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTT 4641023 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | ||||| ||||||| ||||| || || || ||||||||||| | Sbjct 3557648 ACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGA 3557589 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||||||||| | || || |||||||| || || || Sbjct 3557588 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 3557529 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||| ||| ||| | ||||| || || || Sbjct 3557528 GATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 3557469 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| || || | ||||| ||||| || ||||| || Sbjct 3557468 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 3557418 >seq472 Length=2253382 Score = 120 bits (132), Expect = 3e-22 Identities = 285/431 (66%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 154071 GTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATA 154130 ||| |||||||||||||||| |||||||| | ||||| || || | || || ||||| Sbjct 818047 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATC 818106 Query 154131 TACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCC 154190 |||| || || || || || | ||||| || || || || || || ||| Sbjct 818107 GGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCC 818166 Query 154191 CAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTC 154250 || ||||||| | || |||| | ||||||||| ||||| ||||| | ||| ||| Sbjct 818167 CAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTC 818226 Query 154251 GCCGGACTGTCACTATAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCT 154310 |||||||| | || | |||||| || | | ||||| || || || ||| Sbjct 818227 ACCGGACTGCCCTCGTACGTCTCGTACGGTCCATCTCGAGCGGCCAACTCACAGCTCGCT 818286 Query 154311 TCTAACGCCGCATAGTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCA 154370 || | ||| | ||||| | ||||||| ||||||| |||| | ||| || | || Sbjct 818287 TCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGTTGATTTAGCTTTTGAGCCTCTTCG 818346 Query 154371 CTTTCGTACGGCAATCCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCA 154430 ||||||||||| | | || | || |||||||| | || || | ||| | || Sbjct 818347 CTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCGATCCCG 818406 Query 154431 ACGGGTCTGTGTTTTAAATTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCG 154490 | || ||||| | ||| || || || || || ||||| ||||||| ||| Sbjct 818407 ATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCA 818466 Query 154491 ATAATTTTATT 154501 || ||||| || Sbjct 818467 ATGATTTTGTT 818477 Score = 98.7 bits (108), Expect = 1e-15 Identities = 574/908 (63%), Gaps = 23/908 (3%) Strand=Plus/Plus Query 154625 GTATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATT 154684 ||| | |||||| || | |||||| || ||| |||||||| | || | ||| || Sbjct 818604 GTACTCCACAATCTCAGTGCACAAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTT 818663 Query 154685 CGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGT 154744 ||| ||||| || || ||||||| |||||||| ||| |||||||| || | Sbjct 818664 ACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGA 818723 Query 154745 TTCAATAATTGTGCGAAACAGACTTC--GCGCCTCAACTTGACAAGTAAATCGATTTTCG 154802 ||| || || | | || || | || |||||| || || | |||| ||| || Sbjct 818724 TTCGATGATCG--CAAACCACAGATCCTGCGCCTTCACCTGCCGCATAAAGCGACCCTCT 818781 Query 154803 CTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGA 154862 |||| || |||||| || || |||||| | | |||||| | |||||| Sbjct 818782 TTCTCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCCCCAGGTGTCCGATAGCCCGGGA 818841 Query 154863 CAGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAA 154922 || || || ||||||| |||||||||||| | || || | ||| |||| Sbjct 818842 CAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCCTCCACACGCTGCATGAACAGG 818901 Query 154923 TCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTT 154982 ||||| | ||| | ||||| |||| || || || || || ||| ||||| Sbjct 818902 TCCGGTATCCAGAGTGCGTAAAACATGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTT 818961 Query 154983 CGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATC 155042 ||| | || | ||| || |||| || | ||||||||||| | ||| | ||| | Sbjct 818962 TTCTTCAGATCGAGAAACTCGAATATATCACCATGCCACGGCTCGAGATAGATGGCGAAT 819021 Query 155043 GCGCCTTTGCG---TTTTCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGC 155099 || || || || || || ||||| |||| || | ||| ||||| |||||| Sbjct 819022 GCTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGC 819081 Query 155100 AACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCC----ACGTATCGCGCTGCCGCG 155155 | || || ||| ||| | | | ||||| || || | ||| || | || Sbjct 819082 AGCATCGGCACCAGACCGTTCGATATCCCGTTCGTACCGGAGATGTA-CG---TTCCCTT 819137 Query 155156 AGCACGCGCTTTA-TGAACATTAACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCAC 155214 || || | | | || || || | || | || ||| | | || || ||| | |||| Sbjct 819138 CGCGCG-GATACAGTGCACGTTCAGTCCGATGCCACCGGCCGACTTTGAAATTAGGGCAC 819196 Query 155215 AGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAAC 155274 | | | || || ||||| || || | ||||| ||||| || ||||||| ||| | Sbjct 819197 ACTGCTTCAGCGTGTCGTAGATGCCCTCAATGCTATCTTCGGACATGGTCAACAGGAAGC 819256 Query 155275 ACGAAGATAATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAA 155334 | || || | || || | | | | |||||||| | || || ||||| |||| Sbjct 819257 AGGACGAAAGCTGGGGACGCTGCGTGGCCGCCGCAAACATAGTTGGCGAGGCGTGGGTAA 819316 Query 155335 ACATTTTGTTGGCGGTTA--AG-TTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGT 155391 | | | | ||| | || ||||| || ||||| || || || ||||| || | Sbjct 819317 A-GTAACGCT--CGGACAGCAGATTGTAGGTCTCGATCGCTGCATCGATGTCCTCGCCAT 819373 Query 155392 GTATACCGATCGCCACGCGCATCAGCATGTGTTGAATGCGCTCCGCAACGCGGCCGTTGA 155451 | || || || || ||||||||||||||||| || |||||| | | || |||| Sbjct 819374 GGATGCCAATAGCAACGCGCATCAGCATGTGCTGGGGGCGCTCGACGATTTTTCCCTTGA 819433 Query 155452 TGCGCTTTAAGTACCCATTTTCCAAAGTTTTATACGCAAAATACTTGTATTCGTAGTCTC 155511 | | |||||| |||||| |||||| | | ||||| ||||| || |||| | Sbjct 819434 TCTTCAGTAAGTATGATCGTTCCAAGGTTTTAAAGCCGAAATAGTTGTACCCGAAGTCGC 819493 Query 155512 GTTTGTAA 155519 | | |||| Sbjct 819494 GATCGTAA 819501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499637217890160