Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq472 444 6e-120 seq328 113 4e-20 seq327 104 2e-17 seq250 87.8 2e-12 >seq472 Length=2253382 Score = 444 bits (492), Expect = 6e-120 Identities = 1022/1529 (67%), Gaps = 20/1529 (1%) Strand=Plus/Plus Query 153027 TGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAA 153086 ||||| ||||| || |||||||||| || ||| || || || || || ||| | Sbjct 817993 TGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTAC 818052 Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 || || || ||||| || ||||| || ||||| ||||||| || |||||||| ||| Sbjct 818053 GGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCC 818112 Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 | || || ||||| || | ||||||| || | ||||||||| | ||| | | Sbjct 818113 AACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTC 818172 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266 ||||| ||| |||| | ||||||||| |||||||| || | || || | ||| Sbjct 818173 CACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTCACCGGA 818232 Query 153267 CTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGC 153326 ||||| | |||| ||| || || || ||||| || ||||| || || ||| Sbjct 818233 CTGCCCTCGTACGTCTCGTACGGTCCATCTCGAGCGGCCAACTCACAGCTCGCTTCCAGC 818292 Query 153327 GCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCG 153386 ||||| ||||| ||||||||| ||||||| ||| || || |||||||| ||| Sbjct 818293 GCGCCGTAGTAGATGGTTTCGAATATTTGTTGATTTAGCTTTTGAGCCTCTTCGCTTTCG 818352 Query 153387 TACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGT 153446 ||||| ||||| ||| | || || ||||||| ||||| | |||| ||||| || Sbjct 818353 TACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCGATCCCGATCGGC 818412 Query 153447 CGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAATT 153506 | || | ||| |||| | || || | |||||||| |||| ||| || ||| Sbjct 818413 CTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCAATGATT 818472 Query 153507 TTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGTC 153566 ||||| || |||||| || |||| | |||| || || | || ||||| || Sbjct 818473 TTGTTCAGATTGCGCGTTACGGTCTTAGCGACTTCCTTCAGCTTTGCAAAGTCATACGT- 818531 Query 153567 ATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTC 153626 || ||| ||| | |||| ||| || || |||||||| || || || | Sbjct 818532 --TTTGTCTTGCTTTACAAACATGTTCAAGGCGATCGAGGCCAGATTGCATACCGCTACC 818589 Query 153627 TCTTCGG-CGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCC 153685 || || || || ||||| ||| ||||| | ||| | |||| ||||| ||| ||| Sbjct 818590 TCATCCTTCGACGA-GTACTCCACAATCTCAGTGCACAAGTTGGAACATTTGATGGTGCC 818648 Query 153686 CAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCC 153745 | ||| ||||| || ||||| |||||||| || || ||| | |||||||||||| |||| Sbjct 818649 GATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGCC 818708 Query 153746 GGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGCTG 153802 ||| || || |||| ||||| ||| ||||| ||| |||||||| |||| || | Sbjct 818709 GGTTTCCACCTGCGATTCGATGATCGCAAACC---ACAGATCCTGCGCCTTCACCTGCCG 818765 Query 153803 CCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCA 153862 | | |||| ||||| ||||||| | | |||||| ||| ||||| ||||| || Sbjct 818766 CATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCCCCAGGT 818825 Query 153863 GTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGAC 153922 ||| | || |||||||| | ||||| |||||||| |||||| |||| || | || Sbjct 818826 GTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCCTCCAC 818885 Query 153923 GCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATC 153982 || |||||||||| ||||| | |||||| ||||| | | ||| || || | || Sbjct 818886 ACGCTGCATGAACAGGTCCGGTATCCAGAGTGCGTAAAACATGTCCCGTGCGCGGACCTC 818945 Query 153983 CTCCGCGCCCATGTTGCGTTTCAGATTGAG-CACGCTATAGATGTCGGCGTGCCAGGGTT 154041 |||| ||| |||| ||||||| ||| || | | | || || | ||||| || | Sbjct 818946 CTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGA-ATATATCACCATGCCACGGCT 819004 Query 154042 CAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCACCA 154098 | | |||| ||| | || || ||| || || ||||||||||||| || || Sbjct 819005 CGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCG 819064 Query 154099 TATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT--CGAATT 154156 |||||||| ||||||||| ||| || |||| ||| | | | ||||| || || | Sbjct 819065 TATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGATATCCCGTTCGTACCGGA-- 819122 Query 154157 GATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTT 154216 ||| | | || ||||| | |||||||| | || ||||| ||| | |||| Sbjct 819123 GATGTACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCCGATGCCACCGGCCGACTT 819182 Query 154217 TGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGAC 154276 ||| || || || | |||||| ||||||||| || |||||||| ||| | Sbjct 819183 TGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAATGCTATCTTCGGACAT 819242 Query 154277 GCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGG 154336 | | || ||| || || | | || ||| |||| |||||| ||| | || || Sbjct 819243 GGTCAACAGGAAGCAGGACGAAAGCTGGGGACGCTGCGTGGCCGCCGCAAACATAGTTGG 819302 Query 154337 ACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGAT 154396 ||||| ||||| | | || || ||| || ||||| || | ||||| Sbjct 819303 CGAGGCGTGGGTAAAGTAACGCTCGGACAGCAGATTGTAGGTCTCGATCGCTGCATCGAT 819362 Query 154397 ATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 || ||||| || ||||| | || |||||||| ||||||||||| || || ||| ||| Sbjct 819363 GTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGTGCTGGGGGCGCTCGACGAT 819422 Query 154457 TCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGAAATACTTGTA 154516 | | | ||||||| | ||| ||| | |||||| | |||||||| ||||| Sbjct 819423 TTTTCCCTTGATCTTCAGTAAGTATGATCGTTCCAAGGTTTTAAAGCCGAAATAGTTGTA 819482 Query 154517 TTCAAAATCTAGCTCATGAGCGATGGCCG 154545 | || || | || | | |||||||| Sbjct 819483 CCCGAAGTCGCGATCGTAAATGATGGCCG 819511 >seq328 Length=4755327 Score = 113 bits (124), Expect = 4e-20 Identities = 295/441 (67%), Gaps = 8/441 (2%) Strand=Plus/Plus Query 52305 CTGCTGAATGCGTTCGAGCACG-TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAA 52363 ||| | ||||| |||| ||| |||||||||| ||||| | ||||| |||| Sbjct 1649208 CTGTTCAATGCCATCGAA-ACGCTGCCGTGCGTGAAGCGGAAGGCGGATTGGGCGCTGAA 1649266 Query 52364 GTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGA 52423 |||||| |||| | | |||| | | |||||| | ||||| ||||| || || Sbjct 1649267 CTGGATCTCGAGCAAGAAGGCCAACTTTGGCGAGCGGGTCGTGGCTTTCGCTGCGGTTGA 1649326 Query 52424 GGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAAT 52483 ||| | || || ||| ||||| ||||| ||||| | | || | | ||| | || Sbjct 1649327 GGGTATCTTCTTCAGCGGTAGCTTCGCCGCGATCTTCTGGCTGAAGAAGCGTGGCCTGAT 1649386 Query 52484 GCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTT 52543 ||| || || || ||| |||||| |||| |||||||||||||| |||||| ||||| Sbjct 1649387 GCCGGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGACGAAGGGCTGCACTGCGACTT 1649446 Query 52544 TGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCTGA 52602 ||| ||||| | |||| | ||| | ||| | || ||| | || | || Sbjct 1649447 TGCCTGCCTGATGTTCAAGTATCTGGTG-CAGAAGCCGTCGA--AGGAGCGCGTGACGGA 1649503 Query 52603 GCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCG 52662 | || || || ||||| ||||| ||||||| | ||| || |||||||| | Sbjct 1649504 G-ATCATCCGCGATGCGGTCCTGATCGAGCAGGAGTTCCTGACGAAGGCACTGCCGGTGG 1649562 Query 52663 AGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTC 52722 | |||||||||||||| | |||| ||||||| ||||||||||| ||||| Sbjct 1649563 ATATGCTGGGCATGAACTGTGATCTGATGTCGCAGTACATTGAGTTTGTGGCCGATCGCT 1649622 Query 52723 TGTTGGTGCAGCTCGGGCAGC 52743 || || | |||| |||| || Sbjct 1649623 TGCTGCTCGAGCT-GGGCTGC 1649642 >seq327 Length=13998812 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 ||| | ||| || || | | ||||||||| || |||||||||||| || ||||| Sbjct 3501145 ACGAAGAACCAAGTGAAGGGGTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCC 3501086 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 |||||| || || ||||||| |||| | |||||| || || ||||| ||||| || || Sbjct 3501085 GTCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTT 3501026 Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| || || | | || | ||||| | || ||| ||||| | ||| | Sbjct 3501025 ATCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGAT 3500966 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || || |||||||| || || || || ||||||||| Sbjct 3500965 GGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATG 3500929 >seq250 Length=5469655 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| || | ||| | | | || ||||| ||||||||||||||| | ||| || Sbjct 4640806 CGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCA 4640865 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 ||||| || || || |||| |||| |||||||| || || || || || ||||| ||| Sbjct 4640866 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTG 4640925 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||| ||| || | | || | ||||| | | ||| ||||| | || | Sbjct 4640926 TCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 4640985 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || || || || || ||||| || |||||||||||| Sbjct 4640986 GTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 4641021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496254869218080