Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq472 206 3e-48 seq250 136 4e-27 seq1104 113 4e-20 seq327 100 3e-16 >seq472 Length=2253382 Score = 206 bits (228), Expect = 3e-48 Identities = 940/1456 (65%), Gaps = 61/1456 (4%) Strand=Plus/Plus Query 146056 AGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTG 146115 |||| ||||| |||||||| |||||||| | || |||||||| || ||||| Sbjct 817987 AGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGAC 818046 Query 146116 GTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATG 146175 ||| ||||||||||||| || ||||| ||||| || || ||||| | ||| || ||||| Sbjct 818047 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATC 818106 Query 146176 TACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTG-AATCTTTTCCCGTAGTTTGGA 146234 |||| ||||| || || | | |||||| ||| | ||||||||| | | || Sbjct 818107 GGGGCCAACAGCAGCGAATTGCGAATGCCGTG-CTTGGCGATCTTTTCCTTCAACTCGGC 818165 Query 146235 CCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCG 146294 ||| ||||||| ||||||| || | | || | | ||||| |||| |||| Sbjct 818166 CCAGTTCCACA---GATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTT 818222 Query 146295 GAACAGGGGGCTATTCTCGTACGATTCATAAGGACC--GTCGATCTTGGCCAGTTCGCAG 146352 | || || || |||||||| || || || || |||| | ||||| || ||| Sbjct 818223 GCTCACCGGACTGCCCTCGTACGTCTCGTACGGTCCATCTCGAGC--GGCCAACTCACAG 818280 Query 146353 CTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGA---CGCTCCTG 146409 || |||||||| || |||| ||||| | ||| || | ||||| ||| || Sbjct 818281 CTCGCTTCCAGCGCGCCGTAGTAGATGGTTT---CGAATAT-TTGTTGATTTAGCTTTTG 818336 Query 146410 -GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTA 146467 ||||| ||||| ||||| ||||| || | || | || || ||||| | ||||| | Sbjct 818337 AGCCTCTTCGCTTTCGTA-CGGATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCA 818395 Query 146468 TCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGT 146527 |||| || | || | ||| | | || | | ||| ||| |||||||| Sbjct 818396 CGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGT 818455 Query 146528 GGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCA 146587 ||| || ||||| ||||| ||||| ||| || | || | | |||||| Sbjct 818456 AATTGACATCAATGATTTTGTTCAGATTGCGCGTTACGGTCTTAGCGACTTCCTTCAGCT 818515 Query 146588 GGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCA 146647 || ||||| | ||||| || || || || || |||| | |||||| ||||||| Sbjct 818516 TTGCAAAGTCATACGTTTT-GTCTT--GCTTTACAAACATGTTCAAGGCGATCGAGGCCA 818572 Query 146648 AGTTACATACGGCAGTCTCGTCCTT-GTCGCAATACTGCACAATCTCGGCGCAGAGGTTG 146706 || ||||| || ||| ||||| | || | |||| ||||||||| | ||| | |||| Sbjct 818573 GATTGCATACCGCTACCTCATCCTTCGACG-AGTACTCCACAATCTCAGTGCACAAGTTG 818631 Query 146707 CTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAG 146766 || |||||| |||| | ||| | |||||||| ||||| | |||||||| Sbjct 818632 GAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTAC 818691 Query 146767 AGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGAT--GAATCTAAACAAATCTC 146824 |||||||||||| | |||||||| || | | |||| ||| || | ||| ||| | Sbjct 818692 AGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAAC--CACAGATC-C 818748 Query 146825 TG-GCCTTTACTTGTCTTTCGTACAG-TTTATTCTTT-TCGTATTTCTCGTACAATATTT 146881 || ||||| || || | | || || ||||| ||||| | ||||| | | Sbjct 818749 TGCGCCTTCACCTGCC--GCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCT 818806 Query 146882 CAAAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACC 146941 | || || | ||| || |||||| | | | || || | ||| || Sbjct 818807 CGAACTCTTCGCCCCAGGTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCC 818866 Query 146942 ATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCA 147001 | || ||| ||| ||| || | ||| |||| || || ||||| || | | || Sbjct 818867 ACATTTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCAGAGTGCGTAAAACA 818926 Query 147002 AGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTTGAGGACATCGTAAA 147061 ||| || || | | ||||| ||| |||| ||| | ||| | ||| | | Sbjct 818927 TGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATA 818986 Query 147062 TTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGC---TTACCGCCCT 147118 | || |||||| ||||| | || ||||| ||| || ||| || || |||| Sbjct 818987 TATCACCATGCCACGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCT 819046 Query 147119 GATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGAT- 147177 ||||||||| || || | || ||| |||| || | ||| | ||| || ||| ||| Sbjct 819047 GATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGATA 819106 Query 147178 -----TTTGTGGTGCCGTTGTA------TTGAGCGCTGACGCTTTGCACGCTCAGCCCGA 147226 || || | | |||| | |||| || | |||||| |||| |||| Sbjct 819107 TCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCCGA 819166 Query 147227 GACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGATGCCGTCGA 147286 || ||| || || ||||| | || ||| | || || | ||||||||| || | Sbjct 819167 TGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAA 819226 Query 147287 TGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGCCCG 147346 |||| ||||| ||| |||||| || || | | |||||||| |||| ||| Sbjct 819227 TGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGACGCTGCGTGGCCG 819286 Query 147347 CCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGT---GCCCAGACTCATCA-ATTGATAC 147402 ||||||||| || || |||||| || || || || | || || || |||| || Sbjct 819287 CCGCAAACATAGTTGGCGAGGCGTGGGT-AAAGTAACGCTCGGA--CAGCAGATTG-TAG 819342 Query 147403 GTTTCAATGGCGCT-CAT-AACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCA 147460 || || || |||| ||| | ||| ||||| || ||| | | || |||||||| |||| Sbjct 819343 GTCTCGAT--CGCTGCATCGATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCA 819400 Query 147461 TGTGCTGGGGTCGTTC 147476 |||||||||| || || Sbjct 819401 TGTGCTGGGGGCGCTC 819416 >seq250 Length=5469655 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| ||||| ||| | || || || || ||||| ||||| ||| Sbjct 4640794 CCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAG 4640853 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || ||| |||||| ||||||||||| || || Sbjct 4640854 AGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 4640913 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||||||| ||| || ||| | | |||| ||||||| | |||||| Sbjct 4640914 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACC 4640973 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || |||||||| || ||||| || |||||||||||| Sbjct 4640974 TCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 4641021 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| | |||| ||||| ||| | || ||||| || || || ||||||||| Sbjct 3557650 GCACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCG 3557591 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || |||||| ||| || ||||| || || ||| |||||| ||||||||||| || Sbjct 3557590 GACAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGC 3557531 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || |||||||||||| ||| ||| ||| | | |||| || |||| |||| Sbjct 3557530 GGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCG 3557471 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | || || || || || ||||| || || |||||||| Sbjct 3557470 ACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 3557421 >seq1104 Length=7559990 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| ||| | || || || || || || || || || | Sbjct 5394127 CCACCACGCAGACGGAGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGAC 5394186 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| ||||||||| |||||| ||||||||||| || || Sbjct 5394187 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGG 5394246 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| ||| ||| | | || | || |||| ||| ||| Sbjct 5394247 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATAGTATCCGATGGCTCAACT 5394306 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || |||||||||||||| || ||||||||||| Sbjct 5394307 TCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5394353 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| ||| | || || || || || || || || || | Sbjct 5393899 CCACCACGCAGACGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCCGAC 5393958 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| ||||| ||| |||||| ||||||||||| || || Sbjct 5393959 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 5394018 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| ||| ||| | | |||| || |||| ||| || Sbjct 5394019 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCAACC 5394078 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || |||||||||||||| || ||||||||||| Sbjct 5394079 TCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5394125 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||| ||| | || || || || || || || || || Sbjct 5393670 TCCACCACGCAGACGGAGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGA 5393729 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| || ||||| ||||| || |||||| ||||||||||| || || Sbjct 5393730 CAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGCGG 5393789 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||| | | || | || || | | ||| || Sbjct 5393790 GATTCCCTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATCGTATCGGAAGGCTCAAC 5393849 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | || || |||||||||||||| || ||||||||||| Sbjct 5393850 TTCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 5393897 >seq327 Length=13998812 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 126920 GACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCG 126979 ||||| || || || ||||| ||| || || || || || ||||| || || ||| Sbjct 3501123 GACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCCTCCAGCTGCTTACCGGCG 3501064 Query 126980 TAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGT 127039 ||||||| ||||||||||| ||||| || |||||||| ||| ||| || ||| | Sbjct 3501063 AAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTATCCTGGATCTTGGCCTTCACG 3501004 Query 127040 TGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 127099 | |||| ||||||| |||||| || | || | || ||||| ||||| || || Sbjct 3501003 TTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTC 3500944 Query 127100 ACAAAAATCTGCATG 127114 || || ||||||||| Sbjct 3500943 ACGAAGATCTGCATG 3500929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475493584275360