Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq472 242 3e-59 seq250 104 2e-17 >seq472 Length=2253382 Score = 242 bits (268), Expect = 3e-59 Identities = 975/1519 (64%), Gaps = 56/1519 (4%) Strand=Plus/Minus Query 122841 TACAAATATTTTGGATACAAAACGTTAGAAAACGGATATTTGaaaaaaaTCGAGGAAAAG 122900 ||||| ||||| || | ||||| || ||| ||| || || ||| ||| ||| Sbjct 819482 TACAACTATTTCGGCTTTAAAACCTTGGAACGATCATACTTACTGAAGATCAAGGGAAAA 819423 Query 122901 GTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGAC 122960 ||| ||| || || || ||||| |||||||| ||||| ||| | || || ||| Sbjct 819422 ATCGTCGAGCGCCCCCAGCACATGCTGATGCGCGTTGCTATTGGCATCCATGGCGAGGAC 819363 Query 122961 ATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGT 123020 ||||| |||| ||| || ||| || || |||| | | || || ||||| Sbjct 819362 ATCGATGCAGCGATCGAGACCTACAATCTGCTGTCCGAGCGTTACTTTACCCACGCCTCG 819303 Query 123021 CCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACC 123080 || ||| |||| || || | |||| || || ||| | || || || || || | ||| Sbjct 819302 CCAACTATGTTTGCGGCGGCCACGCAGCGTCCCCAGCTTTCGTCCTGCTTCCTGTTGACC 819243 Query 123081 TTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCC 123140 || |||||| ||||| || ||||| || || || | || || | ||||| Sbjct 819242 ATGTCCGAAGATAGCATTGAGGGCATCTACGACACGCTGAAGCAGTGTGCCCTAATTTCA 819183 Query 123141 AAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCG-GAAGC---CG 123196 || | | ||| ||||| || ||||||||||| ||| ||||| |||| || Sbjct 819182 AAGTCGGCCGGTGGCATCGGACTGAACGTGCACT--GTAT----CCGCGCGAAGGGAACG 819129 Query 123197 --CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAAT 123254 |||| | || |||| || | ||| || | | |||||||| || ||||| Sbjct 819128 TACATCTCCGGTACGAACGGGATATCGAACGGTCTGGTGCCGATGCTGCGCGTCTACAAC 819069 Query 123255 AACGCCGTGCGGCACGTCGACCAGGGCGGCAAA---CGCAAAGGCGCGATGGCGATCTAT 123311 || | | ||| ||||||| ||||| ||||| || || || | || |||||| Sbjct 819068 AATACGGCACGGTACGTCGATCAGGGTGGCAACAAGCGGCCTGGAGCATTCGCCATCTAT 819009 Query 123312 CTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCG 123371 || || |||||||| | |||| | | ||| ||| | || | || |||| || | Sbjct 819008 CTCGAGCCGTGGCATGGTGATATATTCGAGTTTCTCGATCTGAAGAAAAACACCGGCAAG 818949 Query 123372 GAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGA 123431 || || || || || |||| ||||| | ||| |||| || |||| |||| Sbjct 818948 GAGGAGGTCCGCGCACGGGACATGTTTTACGCACTCTGGATACCGGACCTGTTCATGCAG 818889 Query 123432 CGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGT-GTCCCGGCTTGAG 123490 || || | | ||| ||||| || ||||| |||| || | ||||||| | Sbjct 818888 CGTGTGGAGGCGAACGAAATGTGGAGCCTGATGTG-CCCGCACGATTGTCCCGGGCTATC 818830 Query 123491 CGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACA 123550 ||| | ||| | |||| || || ||||| || |||||| || || | Sbjct 818829 GGACACCTGGGGCGAAGAGTTCGAGAAGCTGTACACGGGGTACGAGAAAGAGGGT---CG 818773 Query 123551 GGTTA---GTCAGGTTCCGGCACGTGATTTGTTCAAATTT---ATTATCGAAACACAAGT 123604 ||| | ||||| ||| | ||| ||| ||| || |||||| | || || Sbjct 818772 CTTTATGCGGCAGGTGAAGGCGCAGGATCTGTGG---TTTGCGATCATCGAATCGCAGGT 818716 Query 123605 CGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAG 123664 |||||||| ||||||||||| ||||| || || ||||| | |||| || ||| Sbjct 818715 GGAAACCGGCGTACCGTACATGCTGTACAAGGATGCTTGCAATCGTAAAAGTAACCAGCA 818656 Query 123665 CAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAG--CGAT 123722 || | || || || |||||| || | ||| | || ||| | || ||| ||| Sbjct 818655 GAATATCGGCACCATCAAATGTTCCAACTTGTGCACTGAGATTGTGGAGTACTCGTCGAA 818596 Query 123723 GCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA--TCGTTGCGTCG--- 123777 | ||| | || || || || ||| |||| ||||| | |||| | ||| | Sbjct 818595 G--GATGAGGTAGCGGTATGCAATCTGGCCTCGATCGCCTTGAACATGTTTGTAAAGCAA 818538 Query 123778 ---AAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGA 123834 |||||| | | | ||| |||| ||| || | | || || ||| | Sbjct 818537 GACAAAACG----TATGACTTTGCAAA-GCTGAAGGAAGTCGCTAAGACCGTAACGCGCA 818483 Query 123835 ATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTG---GAGG--AAGCGCGTTTGTC 123889 || |||||||||| || ||||| |||| ||||| || |||| |||||| || Sbjct 818482 ATCTGAACAAAATCATTGATGTCAATTACTATCCCGTGCCGGAGGCTAAGCGC-----TC 818428 Query 123890 TAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAAT 123949 ||| || ||||| ||| |||| | ||| | || || ||||||| ||||| | | Sbjct 818427 CAATATGCGCCACAGGCCGATCGGGATCGGCGTGCAGGGCATGGCCGATGCGTTCATCCT 818368 Query 123950 GCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAAC 124009 | ||||| |||||||||||||| || || | ||| ||| |||||| |||||| Sbjct 818367 GATGCGCTATCCGTACGAAAGCGAAGAGGCTCAAAAGCTAAATCAACAAATATTCGAAAC 818308 Query 124010 AATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGA 124069 || || |||||||| |||| |||||||| || | || | || ||||||| Sbjct 818307 CATCTACTACGGCGCGCTGGAAGCGAGCTGTGAGTTGGCCGCTCGAGATGGACCGTACGA 818248 Query 124070 AAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTAC 124129 | |||| |||||| |||| |||| || || ||||||||||| |||||||| Sbjct 818247 GACGTACGAGGGCAGTCCGGTGAGCAAGGGCATCTTGCAGTACGAGATGTGGAACAAGGA 818188 Query 124130 ACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCG 124189 |||||| || ||||| ||||| || || || || || | | |||||| | || Sbjct 818187 ACCGACGGATCTGTGGAACTGGGCCGAGTTGAAGGAAAAGATCGCCAAGCACGGCATTCG 818128 Query 124190 TAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAA 124249 || |||||| || |||| ||||||||||| |||| || |||||| | || ||||| Sbjct 818127 CAATTCGCTGCTGTTGGCCCCGATGCCGACGGCTTCCACGGCACAAATTCTCGGCAACAA 818068 Query 124250 CGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTT 124309 ||||| |||||||||| ||| || | ||| | || ||| | | ||||| || Sbjct 818067 TGAATCGTTCGAGCCGTACACGTCGAACGTTTACAATAGGCGCGTGCTGTCGGGCGAGTT 818008 Query 124310 TCAAGTGATAAATCATCAT 124328 || ||| | || |||||| Sbjct 818007 CCAGGTGGTGAACCATCAT 817989 >seq250 Length=5469655 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | || ||| ||||| || || |||||||| || || || || ||| | Sbjct 4640794 CCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAG 4640853 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| |||| || || || ||| | |||| || ||||| || || ||| Sbjct 4640854 AGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 4640913 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || || || || ||| || | || | ||||| |||| |||||| Sbjct 4640914 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACC 4640973 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || |||||||| || ||||| || ||||| ||||| Sbjct 4640974 TCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 4641020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451996340851440