Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq472 197 2e-45 seq328 176 7e-39 >seq472 Length=2253382 Score = 197 bits (218), Expect = 2e-45 Identities = 410/608 (67%), Gaps = 2/608 (0%) Strand=Plus/Plus Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTA 203892 |||||||||||||||||| ||||| || || || ||||| ||| || | | ||||||||| Sbjct 817641 CTTCGTCTTGTCCACCGTAAACTGGATCGCATTTACGGCCGGCTTGGTACGCAGATAGTA 817700 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 |||||| || || | ||| ||| ||| || || | || || || | ||| |||| Sbjct 817701 CATGCCAGTTTTCAATCCCATCTTCCAGCCATAGAAATGGATCGACGTCAGCTTGCCATA 817760 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGAT 204011 ||| || || || | ||||||||| | || || || ||||| ||| ||||| |||| Sbjct 817761 GTTTGGCTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGAT-AAACGCGCCACGAT 817819 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTC 204071 |||||||||| ||||| || ||| ||| |||||||| ||||| ||| ||| ||| | Sbjct 817820 CTGCGGCCATTTTGATGCACGTTTTCACCGAGATCTCCCATACCGTTTTGTACAGGTCGC 817879 Query 204072 TGGTGTGTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCTCA 204131 | | || || | | | | | | |||||| || |||| || || | | Sbjct 817880 GAATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGATCCATTGTTGGACAGAATTTCGT 817939 Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 || || | || |||||| |||| || ||| ||| ||| || || |||| | Sbjct 817940 TCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAAATCCTGCAGAAGATGATGGTTCA 817999 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 | ||| || || || |||||||| | | || | | ||| ||| | || |||| Sbjct 818000 CCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGGCTCGA 818059 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 ||| || |||||||||| ||| || || ||| ||||| ||||| || |||| |||| Sbjct 818060 ACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAACAGCA 818119 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCG 204371 | || ||||| | |||| || || | | ||||| || ||||| || Sbjct 818120 GCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCACAGAT 818179 Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCT 204431 | | |||| | | |||||| ||| |||| |||||||| | || || || ||||||| Sbjct 818180 CCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTCACCGGACTGCCCT 818239 Query 204432 TGTACGTC 204439 ||||||| Sbjct 818240 CGTACGTC 818247 Score = 114 bits (126), Expect = 2e-20 Identities = 338/514 (66%), Gaps = 8/514 (2%) Strand=Plus/Plus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 |||||| ||||| ||||||||||| || || | || | || |||||||||| Sbjct 818607 CTCCACAATCTCAGTGCACAAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTTACT 818666 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002 || || || || | |||||||||| |||| |||| | ||| | |||| ||| ||| Sbjct 818667 TTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTC 818726 Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATC--CCTTGAGAC 205060 | || ||||| || | |||| ||| ||| || || | | || | | Sbjct 818727 GATGATCGCAAACCACAGATCCTGCGCCTTCACCTGCCGCA--TAAAGCGACCCTCTTTC 818784 Query 205061 TCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACAT 205120 ||||| ||||||||| | | || || || | |||| ||||| ||||| Sbjct 818785 TCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCCCCAGGTGTCCGATAGCCCGGGACAA 818844 Query 205121 TTTTTGGGACACATCAGAGACCACATCT-GATCGTCTTTCACCCTCTCCATAAACAGGTC 205179 | | || |||||||| |||||| | | ||| || ||| | || ||| |||||||| Sbjct 818845 TCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCCTC-CACACGCTGCATGAACAGGTC 818903 Query 205180 GCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTT 205239 ||||| || ||||||||| || || || | | | || | || ||| || Sbjct 818904 CGGTATCCAGAGTGCGTAAAACATGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTT 818963 Query 205240 TTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTG 205298 |||| || || || || | || || | ||||||||||| | | | ||| | || Sbjct 818964 CTTCAGATCGAGA-AACTCGAATATATCACCATGCCACGGCTCGAGATAGATGGCGAATG 819022 Query 205299 CGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCA 205358 | || |||| |||||| |||||||| || || || | | | |||| | || |||| Sbjct 819023 CTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCA 819082 Query 205359 GCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392 ||||||||||||||||||| | |||||||||| Sbjct 819083 GCATCGGCACCAGACCGTTCGATATCCCGTTCGT 819116 >seq328 Length=4755327 Score = 176 bits (194), Expect = 7e-39 Identities = 245/340 (72%), Gaps = 5/340 (1%) Strand=Plus/Minus Query 159745 CAGCAACCTGTCTGCCACAAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCA 159803 |||||| | || |||||||| || ||||| || | ||||| | |||||||| || |||| Sbjct 1649627 CAGCAAGCGATCGGCCACAAACTCAATGTA-CTGCGACATCAGATCACAGTTCATGCCCA 1649569 Query 159804 GCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863 ||| || || || || | || ||| ||||||| ||| ||| |||||| ||| | Sbjct 1649568 GCATATCCACCGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCAGGACCGCATCGCGGA 1649509 Query 159864 CAATCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGC 159923 |||| || || || || | | |||||| || | | | ||| |||| |||| Sbjct 1649508 TGATCTCCGTCACGCGCTCCTTCGACGGCTTCTGCACCA---GATACTTGAACATCAGGC 1649452 Query 159924 ACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGC 159983 | ||||||||||||||||| || ||||| || ||||| | |||||| || | | |||| | Sbjct 1649451 AGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTC 1649392 Query 159984 CCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGA 160043 ||||||| | |||||| || ||||| || || || || || |||||| || |||| Sbjct 1649391 CCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTACCGCTGAAGAAGA 1649332 Query 160044 TCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAA 160083 | ||||| || || || || ||||||| || ||| ||||| Sbjct 1649331 TACCCTCAACCGCAGCGAAAGCCACGACCCGCTCGCCAAA 1649292 Score = 118 bits (130), Expect = 2e-21 Identities = 172/240 (72%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 160205 ATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAA 160264 |||||| ||||||||| || |||||||||||| || || ||||| ||| |||||| Sbjct 1649065 ATCAGCAGCGAGTACATCTCGCTGTGCACATTTTCCATCGCAATCTGGAAGCCGTAGAAG 1649006 Query 160265 TATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACC 160324 | ||||||| | |||||||||||| |||| | || ||||||| | || || Sbjct 1649005 CAGCGCGCCTCCGTAACCTGCACCTCCTGGCTGAAGCGTTCCACCAGATTCTCGTTCACG 1648946 Query 160325 AACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTG 160384 | ||||||| || |||||||| |||| |||||| || ||||| || | ||| || | Sbjct 1648945 ATACCGTCGGACGCGGCAAAGAAGGCCAGCACGTGGGAAATGAAGTGGCGTTCG-CTCGG 1648887 Query 160385 TTGAGTC-TCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 || || | ||||||| ||| ||| | || || ||||||||||||| | |||| Sbjct 1648886 TT---TCAGCGACTCCCAGTCCTTCATGTCCTTGGACAGATCAACCTCTTCCACCGTCCA 1648830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795143133519840