Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20arabiensis_20[genbank_20GCA_5F000349185.1_202013-04-02] 1,214 sequences; 246,567,867 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq250 141 2e-28 seq1104 134 3e-26 seq327 129 1e-24 >seq250 Length=5469655 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| ||| || || || || ||||| ||||| || | ||||||||| | | ||| Sbjct 4640800 CGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTG 4640859 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| ||||||||||| ||||||||||| || || ||| ||| Sbjct 4640860 CGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCT 4640919 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| |||||| |||||| |||| ||||| | | || || || | Sbjct 4640920 TCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGT 4640979 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| |||||||| ||||| || Sbjct 4640980 GTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTG 4641017 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || || || ||||||||||| |||| |||||| || | || || Sbjct 3557641 CGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGCGTG 3557582 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| ||||||||||| ||||||||||| || || ||||| Sbjct 3557581 CGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCC 3557522 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| || || | | || || || | Sbjct 3557521 TCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGG 3557462 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||||||||| ||||| || || || || Sbjct 3557461 GTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTG 3557424 >seq1104 Length=7559990 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || || || || ||||| |||| ||| ||||| | || || | |||||| Sbjct 5393914 AGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCT 5393973 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||||||||| ||||||||||| || || ||||| || ||| Sbjct 5393974 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 5394033 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| || || | || || || |||| ||||| ||| Sbjct 5394034 TGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCAACCTCCAGAGTGATGGTC 5394093 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||||||||| ||||| || Sbjct 5394094 TTTCCGGTCAGAGTTTTCACGAAAATCTG 5394122 Score = 131 bits (144), Expect = 4e-25 Identities = 161/219 (74%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || |||||||| ||||| |||| ||| ||||| | || || | ||||| Sbjct 5394142 AGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCC 5394201 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||||||||| |||||||| ||||||||||| || || ||||| || ||| Sbjct 5394202 TCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 5394261 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | || || | || || || |||| ||||| ||| Sbjct 5394262 TGGATCTTCGCCTTCACATTCTCAATAGTATCCGATGGCTCAACTTCCAGAGTGATGGTC 5394321 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTA 199636 || || || ||||||||||| ||||| | | | |||||| Sbjct 5394322 TTTCCGGTCAGAGTTTTCACGAAAATCT-GCATATTTTA 5394359 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || |||||||| ||||| |||| ||| ||||| | || || | ||||| Sbjct 5393686 AGAACCAGATGAAGAGTCGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCC 5393745 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||| ||||| ||||||||||| || || ||||| || ||| Sbjct 5393746 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 5393805 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| |||||| || | || || | | || || |||| ||||| ||| Sbjct 5393806 TGGATCTTTGCCTTCACATTCTCAATCGTATCGGAAGGCTCAACTTCCAGGGTGATGGTC 5393865 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||||||||| ||||| || Sbjct 5393866 TTTCCGGTCAGAGTTTTCACGAAAATCTG 5393894 >seq327 Length=13998812 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || | |||||||| |||| ||||||||| | ||| || | ||| || Sbjct 3501141 AGAACCAAGTGAAGGGGTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCC 3501082 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| | ||||||||| || ||| ||| || || ||| Sbjct 3501081 TCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTATCC 3501022 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| ||||| | | || || |||| |||||| ||| Sbjct 3501021 TGGATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTC 3500962 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 3500961 TTGCCAGTCAGCGTCTTCACGAAGATCTG 3500933 Score = 105 bits (116), Expect = 2e-17 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| | ||||||||||| |||| ||||||||| | || ||| | ||| ||| Sbjct 3500913 AGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCT 3500854 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 ||||||||||| ||||||||||| | ||||||||| || ||| ||| || || Sbjct 3500853 TCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTC 3500801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178903262611338